miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32998 5' -54.5 NC_007456.1 + 1296 0.66 0.710253
Target:  5'- aGUgCGG-AACCugACCGUCUACGACcUCa -3'
miRNA:   3'- -CGgGUCaUUGG--UGGCGGAUGCUGuGG- -5'
32998 5' -54.5 NC_007456.1 + 7807 0.67 0.632273
Target:  5'- uGCUUAGggaacauccuUAAgUACCGCCUACG-CGCUg -3'
miRNA:   3'- -CGGGUC----------AUUgGUGGCGGAUGCuGUGG- -5'
32998 5' -54.5 NC_007456.1 + 14484 0.7 0.467913
Target:  5'- gGCCCAGUGgaugucaccuucuACCACaGUCUucgcauaGGCACCa -3'
miRNA:   3'- -CGGGUCAU-------------UGGUGgCGGAug-----CUGUGG- -5'
32998 5' -54.5 NC_007456.1 + 9162 0.7 0.428866
Target:  5'- cCCCAGccACCAUCGCC-ACcaGCACCa -3'
miRNA:   3'- cGGGUCauUGGUGGCGGaUGc-UGUGG- -5'
32998 5' -54.5 NC_007456.1 + 3501 1.13 0.00047
Target:  5'- gGCCCAGUAACCACCGCCUACGACACCc -3'
miRNA:   3'- -CGGGUCAUUGGUGGCGGAUGCUGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.