miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32999 5' -52.2 NC_007456.1 + 6371 0.66 0.776468
Target:  5'- -cCAACgC-CAGuCAGCUugGGUcCACGCa -3'
miRNA:   3'- caGUUG-GcGUC-GUUGAugCCA-GUGUG- -5'
32999 5' -52.2 NC_007456.1 + 9156 0.67 0.721747
Target:  5'- cGUCAACCGaUGGUGACUucgGGUCugAUg -3'
miRNA:   3'- -CAGUUGGC-GUCGUUGAug-CCAGugUG- -5'
32999 5' -52.2 NC_007456.1 + 26049 0.67 0.721747
Target:  5'- --gAGCUGCGGUAGCUGagucCGGUCugGa -3'
miRNA:   3'- cagUUGGCGUCGUUGAU----GCCAGugUg -5'
32999 5' -52.2 NC_007456.1 + 30836 0.73 0.381381
Target:  5'- aUCGACCGCAGCAGCaaguccuucUGgGGUCA-ACg -3'
miRNA:   3'- cAGUUGGCGUCGUUG---------AUgCCAGUgUG- -5'
32999 5' -52.2 NC_007456.1 + 4757 0.73 0.372069
Target:  5'- uUCAGCCGcCAGCAGCUugGca-GCACc -3'
miRNA:   3'- cAGUUGGC-GUCGUUGAugCcagUGUG- -5'
32999 5' -52.2 NC_007456.1 + 4651 0.74 0.327877
Target:  5'- --uGACCGUAGUuGCUGCGGUUgACGCg -3'
miRNA:   3'- cagUUGGCGUCGuUGAUGCCAG-UGUG- -5'
32999 5' -52.2 NC_007456.1 + 4713 1.1 0.001011
Target:  5'- cGUCAACCGCAGCAACUACGGUCACACu -3'
miRNA:   3'- -CAGUUGGCGUCGUUGAUGCCAGUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.