miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
330 3' -51.2 AC_000010.1 + 16405 0.66 0.798549
Target:  5'- gCGGCGuguGCAGUGGCGUGgacgcaaAGugCGGCCu -3'
miRNA:   3'- -GUUGU---CGUCGUUGCACg------UCugGUUGG- -5'
330 3' -51.2 AC_000010.1 + 1652 0.66 0.777497
Target:  5'- gGAUGGCAGCAAgcUGCuguGAgCUAACCa -3'
miRNA:   3'- gUUGUCGUCGUUgcACGu--CU-GGUUGG- -5'
330 3' -51.2 AC_000010.1 + 18406 0.66 0.776425
Target:  5'- ---aAGCAGCGACGgcguuuuacacuuUGCacgcccAGACCAACg -3'
miRNA:   3'- guugUCGUCGUUGC-------------ACG------UCUGGUUGg -5'
330 3' -51.2 AC_000010.1 + 18477 0.66 0.766705
Target:  5'- -uGCGGCAGCGGCGUGaugauGACaCAuACa -3'
miRNA:   3'- guUGUCGUCGUUGCACgu---CUG-GU-UGg -5'
330 3' -51.2 AC_000010.1 + 33716 0.66 0.765617
Target:  5'- aAGCAGCuccauuacaacgaGGUcGCGUGCAcGAUCGACg -3'
miRNA:   3'- gUUGUCG-------------UCGuUGCACGU-CUGGUUGg -5'
330 3' -51.2 AC_000010.1 + 16113 0.67 0.755755
Target:  5'- -uGCAGUGGCuGCGcgccUGCGGgACCuGCCa -3'
miRNA:   3'- guUGUCGUCGuUGC----ACGUC-UGGuUGG- -5'
330 3' -51.2 AC_000010.1 + 31132 0.67 0.709499
Target:  5'- -cGCAGCGGCAaaaauucACGUGUauggugGGAaUCAACCc -3'
miRNA:   3'- guUGUCGUCGU-------UGCACG------UCU-GGUUGG- -5'
330 3' -51.2 AC_000010.1 + 15821 0.68 0.675841
Target:  5'- uCGACGGUGGUucuaGUGCGGAUaCGGCCc -3'
miRNA:   3'- -GUUGUCGUCGuug-CACGUCUG-GUUGG- -5'
330 3' -51.2 AC_000010.1 + 13671 0.69 0.605288
Target:  5'- cUAGCAGCAGCGccgGCGcccGUAGacGCCAGCg -3'
miRNA:   3'- -GUUGUCGUCGU---UGCa--CGUC--UGGUUGg -5'
330 3' -51.2 AC_000010.1 + 29831 0.69 0.593553
Target:  5'- -uAUAGCAGCAgGCGUaGUAGAUUAugCa -3'
miRNA:   3'- guUGUCGUCGU-UGCA-CGUCUGGUugG- -5'
330 3' -51.2 AC_000010.1 + 12214 0.7 0.581856
Target:  5'- --uUAGaCAGCAACcc-CAGGCCAACCg -3'
miRNA:   3'- guuGUC-GUCGUUGcacGUCUGGUUGG- -5'
330 3' -51.2 AC_000010.1 + 32923 0.7 0.569044
Target:  5'- uCAGCAGCAGUcgcacggAGCGgcGCAGACagCGACUg -3'
miRNA:   3'- -GUUGUCGUCG-------UUGCa-CGUCUG--GUUGG- -5'
330 3' -51.2 AC_000010.1 + 3733 0.7 0.54709
Target:  5'- aAGCGGCAGCAGC-UGCAGcuGCau-CCa -3'
miRNA:   3'- gUUGUCGUCGUUGcACGUC--UGguuGG- -5'
330 3' -51.2 AC_000010.1 + 11807 0.7 0.535642
Target:  5'- aCGACAGgAuGCAcCGUGCAGugagcGCCAGCa -3'
miRNA:   3'- -GUUGUCgU-CGUuGCACGUC-----UGGUUGg -5'
330 3' -51.2 AC_000010.1 + 8559 0.73 0.377807
Target:  5'- -cGCGGCGcCGACGUGCcacuGCCAGCCa -3'
miRNA:   3'- guUGUCGUcGUUGCACGuc--UGGUUGG- -5'
330 3' -51.2 AC_000010.1 + 26409 0.73 0.377807
Target:  5'- aCAACAGCAGCAAgGaccuccaGCAGAaaaCCAGCa -3'
miRNA:   3'- -GUUGUCGUCGUUgCa------CGUCU---GGUUGg -5'
330 3' -51.2 AC_000010.1 + 12104 0.74 0.368433
Target:  5'- -cGCAauGCgGGCGGCGcUGCAGAgCCAGCCg -3'
miRNA:   3'- guUGU--CG-UCGUUGC-ACGUCU-GGUUGG- -5'
330 3' -51.2 AC_000010.1 + 30986 0.75 0.307376
Target:  5'- cCAGCAGCAGgAACGUGCc-GCCAAg- -3'
miRNA:   3'- -GUUGUCGUCgUUGCACGucUGGUUgg -5'
330 3' -51.2 AC_000010.1 + 25503 0.75 0.283679
Target:  5'- aCAGCGGCAGUGGCacucaaGCAGGCCAucuCCg -3'
miRNA:   3'- -GUUGUCGUCGUUGca----CGUCUGGUu--GG- -5'
330 3' -51.2 AC_000010.1 + 16075 0.76 0.276108
Target:  5'- -uGCAGCAGCAGCG-GCcauugccaacauGGcCCAACCg -3'
miRNA:   3'- guUGUCGUCGUUGCaCG------------UCuGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.