miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33001 3' -49.5 NC_007456.1 + 16727 0.66 0.892375
Target:  5'- uAGucuGCCuCAGCAGUCGUAuGACuCAg- -3'
miRNA:   3'- -UCuu-UGG-GUCGUCAGUAUuCUG-GUga -5'
33001 3' -49.5 NC_007456.1 + 21469 0.67 0.831048
Target:  5'- cGAAAaucaucacaUCGGCAGUCAgcAGACCAUc -3'
miRNA:   3'- uCUUUg--------GGUCGUCAGUauUCUGGUGa -5'
33001 3' -49.5 NC_007456.1 + 10337 0.68 0.790429
Target:  5'- aAGAGggucGCCCGGUAaauGUCGUAGGGUCACa -3'
miRNA:   3'- -UCUU----UGGGUCGU---CAGUAUUCUGGUGa -5'
33001 3' -49.5 NC_007456.1 + 7120 0.68 0.779761
Target:  5'- --cAACCCAGUGGUCuUAuGACUGCUg -3'
miRNA:   3'- ucuUUGGGUCGUCAGuAUuCUGGUGA- -5'
33001 3' -49.5 NC_007456.1 + 7191 1.09 0.002222
Target:  5'- aAGAAACCCAGCAGUCAUAAGACCACUg -3'
miRNA:   3'- -UCUUUGGGUCGUCAGUAUUCUGGUGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.