miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33007 3' -43.6 NC_007456.1 + 18492 0.66 0.997241
Target:  5'- uUCGCgccuucAGCAGcGAACCCUUCAcguucAGCc -3'
miRNA:   3'- -AGUGaaau--UCGUU-UUUGGGGAGU-----UCG- -5'
33007 3' -43.6 NC_007456.1 + 37365 0.66 0.997241
Target:  5'- cUCGCUgucccugcUUAGGUuuGAGuuCCUUAAGCu -3'
miRNA:   3'- -AGUGA--------AAUUCGuuUUUggGGAGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 20026 0.67 0.995143
Target:  5'- aUAgUUUAGGCuuGAGCCauguCCUCAccAGCu -3'
miRNA:   3'- aGUgAAAUUCGuuUUUGG----GGAGU--UCG- -5'
33007 3' -43.6 NC_007456.1 + 24282 0.67 0.994207
Target:  5'- gUCACcuaGGGCAAacucuGAGCCUacaUCAAGCu -3'
miRNA:   3'- -AGUGaaaUUCGUU-----UUUGGGg--AGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 7438 0.68 0.993132
Target:  5'- aCGCUUcuGGCGA--GCCUCUUcAGCu -3'
miRNA:   3'- aGUGAAauUCGUUuuUGGGGAGuUCG- -5'
33007 3' -43.6 NC_007456.1 + 17359 0.68 0.991902
Target:  5'- aCGCUgagaagauggGAGCuauuaguCUCCUCAAGCa -3'
miRNA:   3'- aGUGAaa--------UUCGuuuuu--GGGGAGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 36955 0.68 0.991902
Target:  5'- aCGCaUUGAGUAAAGACUuaguggcgCgUCAGGCg -3'
miRNA:   3'- aGUGaAAUUCGUUUUUGG--------GgAGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 3031 0.68 0.990504
Target:  5'- aCACUUgAGGaCGAAAuCCgCUUCGGGCg -3'
miRNA:   3'- aGUGAAaUUC-GUUUUuGG-GGAGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 4382 0.69 0.982936
Target:  5'- -gACUUUAAGCuc---CUCCUCAAuGCg -3'
miRNA:   3'- agUGAAAUUCGuuuuuGGGGAGUU-CG- -5'
33007 3' -43.6 NC_007456.1 + 39474 0.7 0.971517
Target:  5'- cCACUgUAGGuCAAGGACCgUaggUCAGGCg -3'
miRNA:   3'- aGUGAaAUUC-GUUUUUGGgG---AGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 35561 0.72 0.939922
Target:  5'- aUCACgaauuugcUGAGCAAuAACCCCgaagugaauaCGAGCa -3'
miRNA:   3'- -AGUGaa------AUUCGUUuUUGGGGa---------GUUCG- -5'
33007 3' -43.6 NC_007456.1 + 10785 0.75 0.83737
Target:  5'- gUCACUggAAGCuggcauGAAGGCUCgUCAGGCu -3'
miRNA:   3'- -AGUGAaaUUCG------UUUUUGGGgAGUUCG- -5'
33007 3' -43.6 NC_007456.1 + 22380 1.16 0.003985
Target:  5'- cUCACUUUAAGCAAAAACCCCUCAAGCa -3'
miRNA:   3'- -AGUGAAAUUCGUUUUUGGGGAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.