miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33009 3' -46.7 NC_007456.1 + 38323 0.66 0.975093
Target:  5'- cUGUGACgUUcuGGaGCCUAUcauggGGUCUCa -3'
miRNA:   3'- aAUAUUGgAAuuCC-CGGAUA-----UCAGGG- -5'
33009 3' -46.7 NC_007456.1 + 17721 0.66 0.975093
Target:  5'- --uUGACCUUAAGGucuuugauaCCUuUGGUCUCa -3'
miRNA:   3'- aauAUUGGAAUUCCc--------GGAuAUCAGGG- -5'
33009 3' -46.7 NC_007456.1 + 16037 0.66 0.964703
Target:  5'- ------aCUUAAGGGCCgcUAGgaCCCg -3'
miRNA:   3'- aauauugGAAUUCCCGGauAUCa-GGG- -5'
33009 3' -46.7 NC_007456.1 + 25268 0.67 0.951599
Target:  5'- --cUAACUUauugAAGGGCCUAUAGauuuaCCu -3'
miRNA:   3'- aauAUUGGAa---UUCCCGGAUAUCag---GG- -5'
33009 3' -46.7 NC_007456.1 + 38229 0.68 0.923224
Target:  5'- gUAUGuACCUUGAGcuauucaaGCCUGUAGcggCCCg -3'
miRNA:   3'- aAUAU-UGGAAUUCc-------CGGAUAUCa--GGG- -5'
33009 3' -46.7 NC_007456.1 + 124 0.7 0.838959
Target:  5'- ---cAACCUUAugauagacugggguAGGGCCUuUGGUCUg -3'
miRNA:   3'- aauaUUGGAAU--------------UCCCGGAuAUCAGGg -5'
33009 3' -46.7 NC_007456.1 + 39611 0.7 0.838959
Target:  5'- ---cAACCUUAugauagacugggguAGGGCCUuUGGUCUg -3'
miRNA:   3'- aauaUUGGAAU--------------UCCCGGAuAUCAGGg -5'
33009 3' -46.7 NC_007456.1 + 25378 1.11 0.003445
Target:  5'- cUUAUAACCUUAAGGGCCUAUAGUCCCu -3'
miRNA:   3'- -AAUAUUGGAAUUCCCGGAUAUCAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.