miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33010 3' -52.2 NC_007456.1 + 30328 0.67 0.721525
Target:  5'- gCUGU--UACUGAGGCacucaAGGACCCUu- -3'
miRNA:   3'- gGGCAuuAUGACUCCG-----UCUUGGGGuc -5'
33010 3' -52.2 NC_007456.1 + 18313 0.68 0.699141
Target:  5'- aCUgGUGcUGCUGGGGUuuGAGCCUCAa -3'
miRNA:   3'- -GGgCAUuAUGACUCCGu-CUUGGGGUc -5'
33010 3' -52.2 NC_007456.1 + 29460 0.68 0.665067
Target:  5'- uUCGUAAcGCUGGGGUucuGCCUCAGu -3'
miRNA:   3'- gGGCAUUaUGACUCCGucuUGGGGUC- -5'
33010 3' -52.2 NC_007456.1 + 31585 0.69 0.619218
Target:  5'- -gUGUAAUACUu-GGCAGu-CCCCAGa -3'
miRNA:   3'- ggGCAUUAUGAcuCCGUCuuGGGGUC- -5'
33010 3' -52.2 NC_007456.1 + 29534 1.1 0.001145
Target:  5'- cCCCGUAAUACUGAGGCAGAACCCCAGc -3'
miRNA:   3'- -GGGCAUUAUGACUCCGUCUUGGGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.