miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33016 3' -51.8 NC_007456.1 + 37603 0.66 0.824717
Target:  5'- uGAGGAGuACCCagauagaugauuguGCCUCcGGGcUUCAGg -3'
miRNA:   3'- gCUCUUCuUGGG--------------UGGAG-UCC-AAGUCg -5'
33016 3' -51.8 NC_007456.1 + 27426 0.67 0.777562
Target:  5'- gGuGAAGAACUcaCACCUCAGcgUCAGa -3'
miRNA:   3'- gCuCUUCUUGG--GUGGAGUCcaAGUCg -5'
33016 3' -51.8 NC_007456.1 + 23541 0.67 0.760614
Target:  5'- aGAGcugcaccaauggcuuGAGcgUCCACCUUAGGUgggucauucUCGGCa -3'
miRNA:   3'- gCUC---------------UUCuuGGGUGGAGUCCA---------AGUCG- -5'
33016 3' -51.8 NC_007456.1 + 19534 0.67 0.756318
Target:  5'- gGAGAacuGGAGgCgACCUUAGGUggcguguacUCAGUa -3'
miRNA:   3'- gCUCU---UCUUgGgUGGAGUCCA---------AGUCG- -5'
33016 3' -51.8 NC_007456.1 + 20895 0.69 0.632338
Target:  5'- --uGAGGAGCCUuaggugcgACCaCAGGUUUAGCc -3'
miRNA:   3'- gcuCUUCUUGGG--------UGGaGUCCAAGUCG- -5'
33016 3' -51.8 NC_007456.1 + 4895 0.69 0.620824
Target:  5'- --uGAAGGACCCuaagaACaUCAGGUUCAGa -3'
miRNA:   3'- gcuCUUCUUGGG-----UGgAGUCCAAGUCg -5'
33016 3' -51.8 NC_007456.1 + 23454 0.71 0.518889
Target:  5'- cCGAGAAuGACCCACCUaAGGUggacgcUCAaGCc -3'
miRNA:   3'- -GCUCUUcUUGGGUGGAgUCCA------AGU-CG- -5'
33016 3' -51.8 NC_007456.1 + 8764 1.14 0.000702
Target:  5'- aCGAGAAGAACCCACCUCAGGUUCAGCg -3'
miRNA:   3'- -GCUCUUCUUGGGUGGAGUCCAAGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.