miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33030 3' -58.1 NC_007497.1 + 38946 0.66 0.535872
Target:  5'- uCGGUuuuguGCgUGCgaaCGCGGgUGUCGAGGa -3'
miRNA:   3'- -GCCGu----UG-ACGa--GCGCCaGCAGCUCCa -5'
33030 3' -58.1 NC_007497.1 + 26775 0.66 0.534815
Target:  5'- cCGGCcGCUGCUgaaucugCGCGccGUCGUCGAu-- -3'
miRNA:   3'- -GCCGuUGACGA-------GCGC--CAGCAGCUcca -5'
33030 3' -58.1 NC_007497.1 + 38826 0.66 0.504517
Target:  5'- cCGcCGACUGUgUCGCGG-CGUCGAGc- -3'
miRNA:   3'- -GCcGUUGACG-AGCGCCaGCAGCUCca -5'
33030 3' -58.1 NC_007497.1 + 11282 0.66 0.504517
Target:  5'- cCGGUuuacuugcACUGUUgGCGGUCGaaccuUUGAGGUc -3'
miRNA:   3'- -GCCGu-------UGACGAgCGCCAGC-----AGCUCCA- -5'
33030 3' -58.1 NC_007497.1 + 5822 0.66 0.501424
Target:  5'- cCGGCAGCUucgucggcugacgaGCgagCGCGG-CGaguugcUCGAGGUc -3'
miRNA:   3'- -GCCGUUGA--------------CGa--GCGCCaGC------AGCUCCA- -5'
33030 3' -58.1 NC_007497.1 + 19064 0.67 0.454147
Target:  5'- uCGGCuGCUGCgaCGCGGUCagaaGUgGAGcGUg -3'
miRNA:   3'- -GCCGuUGACGa-GCGCCAG----CAgCUC-CA- -5'
33030 3' -58.1 NC_007497.1 + 39464 0.67 0.4444
Target:  5'- cCGGCGAC-GCUgGCGGgcuaucCGguuacCGAGGUg -3'
miRNA:   3'- -GCCGUUGaCGAgCGCCa-----GCa----GCUCCA- -5'
33030 3' -58.1 NC_007497.1 + 4128 0.67 0.425265
Target:  5'- -cGCAGCcauaaaccGCUCGCGGcacUCGUCGAcGGUc -3'
miRNA:   3'- gcCGUUGa-------CGAGCGCC---AGCAGCU-CCA- -5'
33030 3' -58.1 NC_007497.1 + 42909 0.68 0.397506
Target:  5'- cCGGaaccgcGCUGC-CGCGaGUgCGUCGAGGa -3'
miRNA:   3'- -GCCgu----UGACGaGCGC-CA-GCAGCUCCa -5'
33030 3' -58.1 NC_007497.1 + 27171 0.7 0.282144
Target:  5'- uCGGCGgccguauccgcuccGCUGCcggCGCGGUUGUCGuguuGGa -3'
miRNA:   3'- -GCCGU--------------UGACGa--GCGCCAGCAGCu---CCa -5'
33030 3' -58.1 NC_007497.1 + 36688 0.72 0.220096
Target:  5'- uCGGCGACaGCgaugcccaaGCGGUCGcCGAGGc -3'
miRNA:   3'- -GCCGUUGaCGag-------CGCCAGCaGCUCCa -5'
33030 3' -58.1 NC_007497.1 + 19866 0.78 0.089151
Target:  5'- cCGGCAACc-CUCGCGGUCGUCGAu-- -3'
miRNA:   3'- -GCCGUUGacGAGCGCCAGCAGCUcca -5'
33030 3' -58.1 NC_007497.1 + 1855 1.08 0.000551
Target:  5'- gCGGCAACUGCUCGCGGUCGUCGAGGUg -3'
miRNA:   3'- -GCCGUUGACGAGCGCCAGCAGCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.