Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33030 | 3' | -58.1 | NC_007497.1 | + | 38946 | 0.66 | 0.535872 |
Target: 5'- uCGGUuuuguGCgUGCgaaCGCGGgUGUCGAGGa -3' miRNA: 3'- -GCCGu----UG-ACGa--GCGCCaGCAGCUCCa -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 26775 | 0.66 | 0.534815 |
Target: 5'- cCGGCcGCUGCUgaaucugCGCGccGUCGUCGAu-- -3' miRNA: 3'- -GCCGuUGACGA-------GCGC--CAGCAGCUcca -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 38826 | 0.66 | 0.504517 |
Target: 5'- cCGcCGACUGUgUCGCGG-CGUCGAGc- -3' miRNA: 3'- -GCcGUUGACG-AGCGCCaGCAGCUCca -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 11282 | 0.66 | 0.504517 |
Target: 5'- cCGGUuuacuugcACUGUUgGCGGUCGaaccuUUGAGGUc -3' miRNA: 3'- -GCCGu-------UGACGAgCGCCAGC-----AGCUCCA- -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 5822 | 0.66 | 0.501424 |
Target: 5'- cCGGCAGCUucgucggcugacgaGCgagCGCGG-CGaguugcUCGAGGUc -3' miRNA: 3'- -GCCGUUGA--------------CGa--GCGCCaGC------AGCUCCA- -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 19064 | 0.67 | 0.454147 |
Target: 5'- uCGGCuGCUGCgaCGCGGUCagaaGUgGAGcGUg -3' miRNA: 3'- -GCCGuUGACGa-GCGCCAG----CAgCUC-CA- -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 39464 | 0.67 | 0.4444 |
Target: 5'- cCGGCGAC-GCUgGCGGgcuaucCGguuacCGAGGUg -3' miRNA: 3'- -GCCGUUGaCGAgCGCCa-----GCa----GCUCCA- -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 4128 | 0.67 | 0.425265 |
Target: 5'- -cGCAGCcauaaaccGCUCGCGGcacUCGUCGAcGGUc -3' miRNA: 3'- gcCGUUGa-------CGAGCGCC---AGCAGCU-CCA- -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 42909 | 0.68 | 0.397506 |
Target: 5'- cCGGaaccgcGCUGC-CGCGaGUgCGUCGAGGa -3' miRNA: 3'- -GCCgu----UGACGaGCGC-CA-GCAGCUCCa -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 27171 | 0.7 | 0.282144 |
Target: 5'- uCGGCGgccguauccgcuccGCUGCcggCGCGGUUGUCGuguuGGa -3' miRNA: 3'- -GCCGU--------------UGACGa--GCGCCAGCAGCu---CCa -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 36688 | 0.72 | 0.220096 |
Target: 5'- uCGGCGACaGCgaugcccaaGCGGUCGcCGAGGc -3' miRNA: 3'- -GCCGUUGaCGag-------CGCCAGCaGCUCCa -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 19866 | 0.78 | 0.089151 |
Target: 5'- cCGGCAACc-CUCGCGGUCGUCGAu-- -3' miRNA: 3'- -GCCGUUGacGAGCGCCAGCAGCUcca -5' |
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33030 | 3' | -58.1 | NC_007497.1 | + | 1855 | 1.08 | 0.000551 |
Target: 5'- gCGGCAACUGCUCGCGGUCGUCGAGGUg -3' miRNA: 3'- -GCCGUUGACGAGCGCCAGCAGCUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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