miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 1712 0.68 0.777627
Target:  5'- cGCuCGG-GCAGUUUCucgcGAGCGAu-GCACu -3'
miRNA:   3'- -CG-GCCgUGUCAAAG----UUCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18613 0.68 0.777627
Target:  5'- -gCGGCACGGa--UAAGCGGcucAAGCGCc -3'
miRNA:   3'- cgGCCGUGUCaaaGUUCGCU---UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 38287 0.69 0.756079
Target:  5'- gGCUGGCugaccuGCAGgccgaUUUCcugaagcuGGCGAAAGCGCa -3'
miRNA:   3'- -CGGCCG------UGUC-----AAAGu-------UCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14441 0.79 0.230075
Target:  5'- gGCgGGCGCGGUUgaUCAGGUGAcuucucguucggcGAGCACu -3'
miRNA:   3'- -CGgCCGUGUCAA--AGUUCGCU-------------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 29195 0.78 0.250615
Target:  5'- cGCUGGCACGcGUUUCGGGCGcguGCAUc -3'
miRNA:   3'- -CGGCCGUGU-CAAAGUUCGCuuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 4964 0.76 0.327192
Target:  5'- gGCCGGUGCGGccgUC-GGCGGAGGCAa -3'
miRNA:   3'- -CGGCCGUGUCaa-AGuUCGCUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 32309 0.75 0.40003
Target:  5'- uGCUGGCggGCAG-UUCGguGGCGAuAGCGCg -3'
miRNA:   3'- -CGGCCG--UGUCaAAGU--UCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 16315 0.73 0.504286
Target:  5'- cGUCGGCGUAGUgg-AAGUGAGGGCGCc -3'
miRNA:   3'- -CGGCCGUGUCAaagUUCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 34551 0.72 0.537854
Target:  5'- cGUCGGCACGGU----GGCGcuuGGCGCg -3'
miRNA:   3'- -CGGCCGUGUCAaaguUCGCuu-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27149 0.71 0.595317
Target:  5'- uGCCGGCGCGGUUgUCGuGUugGAcaAGGCGCc -3'
miRNA:   3'- -CGGCCGUGUCAA-AGUuCG--CU--UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14166 0.71 0.630293
Target:  5'- cGCCGGCguccacgcaGCAgGUUUC-AGCGuAGAGCAg -3'
miRNA:   3'- -CGGCCG---------UGU-CAAAGuUCGC-UUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 23705 0.7 0.653638
Target:  5'- gGCCGGcCGCAGUgggUCAcggccGGCGGccGCGu -3'
miRNA:   3'- -CGGCC-GUGUCAa--AGU-----UCGCUuuCGUg -5'
33031 3' -50.4 NC_007497.1 + 35614 0.7 0.676893
Target:  5'- gGCCGGgGCAcg-UCgGAGCuGAAGGCGCu -3'
miRNA:   3'- -CGGCCgUGUcaaAG-UUCG-CUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 36395 0.7 0.699957
Target:  5'- cGUCGGC--AGUUUucCAGGCGcAGGGCGCg -3'
miRNA:   3'- -CGGCCGugUCAAA--GUUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 24981 0.69 0.711384
Target:  5'- gGUCGGC-CAGgcggUCAacAGCGAucuGCACu -3'
miRNA:   3'- -CGGCCGuGUCaa--AGU--UCGCUuu-CGUG- -5'
33031 3' -50.4 NC_007497.1 + 39054 0.69 0.722724
Target:  5'- aGCUGGaagACGGUgccCGAGCGGucGGCGCa -3'
miRNA:   3'- -CGGCCg--UGUCAaa-GUUCGCUu-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 36649 0.69 0.722724
Target:  5'- gGCCGGCACAcgaUCGGGUggucacGAAGGCGa -3'
miRNA:   3'- -CGGCCGUGUcaaAGUUCG------CUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 42459 0.69 0.722724
Target:  5'- uCCGGCGCGG---CGAGCuGAAugguGGCACg -3'
miRNA:   3'- cGGCCGUGUCaaaGUUCG-CUU----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 23503 0.69 0.733962
Target:  5'- gGCCGccGCuCAGgccCAGGCGAAGGCGg -3'
miRNA:   3'- -CGGC--CGuGUCaaaGUUCGCUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 38211 0.69 0.733962
Target:  5'- cGCCGGCGCGaacGUgaucCGGGaCGAGGcGCGCg -3'
miRNA:   3'- -CGGCCGUGU---CAaa--GUUC-GCUUU-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.