miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 5' -54.5 NC_007497.1 + 12023 0.66 0.754625
Target:  5'- gCGGCGAaacCGGUaCCGuGAUcggccGCGCCGa -3'
miRNA:   3'- -GCCGCUa--GUCAaGGCuCUA-----CGUGGCc -5'
33031 5' -54.5 NC_007497.1 + 30422 0.66 0.744176
Target:  5'- gCGGUGAUCGug-CCGuuGAUGuCGCCGa -3'
miRNA:   3'- -GCCGCUAGUcaaGGCu-CUAC-GUGGCc -5'
33031 5' -54.5 NC_007497.1 + 5431 0.66 0.744176
Target:  5'- aGGCGAUCgaGGUUCgCGAGA---ACCGu -3'
miRNA:   3'- gCCGCUAG--UCAAG-GCUCUacgUGGCc -5'
33031 5' -54.5 NC_007497.1 + 27999 0.66 0.722944
Target:  5'- uCGGCGAUCAG---CGAGcuGUGCGCauuCGGc -3'
miRNA:   3'- -GCCGCUAGUCaagGCUC--UACGUG---GCC- -5'
33031 5' -54.5 NC_007497.1 + 5851 0.66 0.701347
Target:  5'- gCGGCGAguugcUCgAGgUCCGuAGAUGC-CUGGu -3'
miRNA:   3'- -GCCGCU-----AG-UCaAGGC-UCUACGuGGCC- -5'
33031 5' -54.5 NC_007497.1 + 17625 0.67 0.690439
Target:  5'- uCGGCGcgCGGcUCCGGcugGC-CCGGa -3'
miRNA:   3'- -GCCGCuaGUCaAGGCUcuaCGuGGCC- -5'
33031 5' -54.5 NC_007497.1 + 16589 0.67 0.668466
Target:  5'- gGGCcgcuGUCGGgccUCCGGGAgccgacGCACUGGa -3'
miRNA:   3'- gCCGc---UAGUCa--AGGCUCUa-----CGUGGCC- -5'
33031 5' -54.5 NC_007497.1 + 41187 0.67 0.657421
Target:  5'- uCGGCGA-CAa--CUGGGAggGCACCGGc -3'
miRNA:   3'- -GCCGCUaGUcaaGGCUCUa-CGUGGCC- -5'
33031 5' -54.5 NC_007497.1 + 40751 0.67 0.657421
Target:  5'- gCGGCGGccgUCucUUCCGAGAUGCcgGCCc- -3'
miRNA:   3'- -GCCGCU---AGucAAGGCUCUACG--UGGcc -5'
33031 5' -54.5 NC_007497.1 + 44307 0.68 0.602051
Target:  5'- uGGCGAUCAa--CCGcggcGGUGCcGCCGGa -3'
miRNA:   3'- gCCGCUAGUcaaGGCu---CUACG-UGGCC- -5'
33031 5' -54.5 NC_007497.1 + 7338 0.68 0.591017
Target:  5'- aGGCu---GGUUCCGAGccggGUACCGGg -3'
miRNA:   3'- gCCGcuagUCAAGGCUCua--CGUGGCC- -5'
33031 5' -54.5 NC_007497.1 + 4123 0.68 0.589915
Target:  5'- gCGGCGGUacgcgagCGGUUCgGGGAcGCGgCGGc -3'
miRNA:   3'- -GCCGCUA-------GUCAAGgCUCUaCGUgGCC- -5'
33031 5' -54.5 NC_007497.1 + 33678 0.69 0.547316
Target:  5'- uCGcGCG-UCAgauugucgauGUUCCGAcGUGCGCCGGc -3'
miRNA:   3'- -GC-CGCuAGU----------CAAGGCUcUACGUGGCC- -5'
33031 5' -54.5 NC_007497.1 + 36977 0.69 0.536541
Target:  5'- -aGUGAUCAGcccgCCG-GcgGCGCCGGa -3'
miRNA:   3'- gcCGCUAGUCaa--GGCuCuaCGUGGCC- -5'
33031 5' -54.5 NC_007497.1 + 8493 0.69 0.52584
Target:  5'- gCGGCGGcUCAGUgcCCGAGAUGgaaACCu- -3'
miRNA:   3'- -GCCGCU-AGUCAa-GGCUCUACg--UGGcc -5'
33031 5' -54.5 NC_007497.1 + 41687 0.71 0.463557
Target:  5'- uGGUGAuuUCGGUUCuCGAucugcugcgccGAUGCugCGGu -3'
miRNA:   3'- gCCGCU--AGUCAAG-GCU-----------CUACGugGCC- -5'
33031 5' -54.5 NC_007497.1 + 7166 0.71 0.457538
Target:  5'- uGGCGggCuGgagCCGAGcaacgcgaagaucagGUGCGCCGGg -3'
miRNA:   3'- gCCGCuaGuCaa-GGCUC---------------UACGUGGCC- -5'
33031 5' -54.5 NC_007497.1 + 15322 0.71 0.453548
Target:  5'- gCGGCGcUCGGccggcgUCCGcgGGAUGCGCCa- -3'
miRNA:   3'- -GCCGCuAGUCa-----AGGC--UCUACGUGGcc -5'
33031 5' -54.5 NC_007497.1 + 35536 0.73 0.360517
Target:  5'- uCGGCGAgcgccuUCAGcUCCGAcGUGCcCCGGc -3'
miRNA:   3'- -GCCGCU------AGUCaAGGCUcUACGuGGCC- -5'
33031 5' -54.5 NC_007497.1 + 39454 0.74 0.280922
Target:  5'- uGGCGGgcuaucCGGUUaCCGAGGUGCcggacauGCCGGa -3'
miRNA:   3'- gCCGCUa-----GUCAA-GGCUCUACG-------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.