Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33033 | 3' | -63.7 | NC_007497.1 | + | 35621 | 0.66 | 0.266356 |
Target: 5'- --cGGcAUGgGCCGgGGCaCGUCGGaGCu -3' miRNA: 3'- guuCC-UACgCGGCgCCG-GCGGCCgCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 1246 | 0.66 | 0.27295 |
Target: 5'- uCGGGGAUGgGCCucgucGgGGUCGauGGUGCu -3' miRNA: 3'- -GUUCCUACgCGG-----CgCCGGCggCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 4965 | 0.66 | 0.279674 |
Target: 5'- --uGGc--CGgUGCGGCCGUCGGCGg -3' miRNA: 3'- guuCCuacGCgGCGCCGGCGGCCGCg -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 3402 | 0.66 | 0.279674 |
Target: 5'- --uGGA-GCGCCGCacGCCGauggaCGGCGa -3' miRNA: 3'- guuCCUaCGCGGCGc-CGGCg----GCCGCg -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 3545 | 0.66 | 0.279674 |
Target: 5'- ---cGGUGCGCUuuGUGGCCGUgaaggCGGcCGCg -3' miRNA: 3'- guucCUACGCGG--CGCCGGCG-----GCC-GCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 21037 | 0.66 | 0.286529 |
Target: 5'- aCGAuGA-GCGagCGCGGCCGCCGGa-- -3' miRNA: 3'- -GUUcCUaCGCg-GCGCCGGCGGCCgcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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