miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 32442 0.69 0.159999
Target:  5'- --cGGccccGUGaCGUGGCCGCCGGuCGCa -3'
miRNA:   3'- guuCCua--CGCgGCGCCGGCGGCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 32562 0.8 0.025113
Target:  5'- --cGGAUgGCGUCGCGGCCgccGCCGGCGg -3'
miRNA:   3'- guuCCUA-CGCGGCGCCGG---CGGCCGCg -5'
33033 3' -63.7 NC_007497.1 + 32836 0.66 0.266356
Target:  5'- -cAGGAgucCGCCGagaacGCCGCUgGGCGCg -3'
miRNA:   3'- guUCCUac-GCGGCgc---CGGCGG-CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 33779 0.84 0.012325
Target:  5'- aCAAGGAUGCGaagGCGGaaGCCGGCGCa -3'
miRNA:   3'- -GUUCCUACGCgg-CGCCggCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 33868 0.66 0.259892
Target:  5'- gAAGGggGCGaaCGCaGCCGa-GGCGCg -3'
miRNA:   3'- gUUCCuaCGCg-GCGcCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 34087 0.71 0.110068
Target:  5'- --cGGcagGgGCCGCGGCCGaCaggGGCGCg -3'
miRNA:   3'- guuCCua-CgCGGCGCCGGC-Gg--CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 34572 0.74 0.072982
Target:  5'- gCGAGccUGCGCgGgCGGCCGCCGuuuGCGCg -3'
miRNA:   3'- -GUUCcuACGCGgC-GCCGGCGGC---CGCG- -5'
33033 3' -63.7 NC_007497.1 + 34635 0.71 0.113088
Target:  5'- --cGGcgGuCGCCGCGGUgGCgccucguuCGGCGCg -3'
miRNA:   3'- guuCCuaC-GCGGCGCCGgCG--------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 34667 0.71 0.113088
Target:  5'- gCAAcGGAgcGUGCCGCGGUCGCgcaaaCGGCGg -3'
miRNA:   3'- -GUU-CCUa-CGCGGCGCCGGCG-----GCCGCg -5'
33033 3' -63.7 NC_007497.1 + 34767 0.76 0.049422
Target:  5'- aAAGGGU-C-UCGCGGCCGCCGaGCGCg -3'
miRNA:   3'- gUUCCUAcGcGGCGCCGGCGGC-CGCG- -5'
33033 3' -63.7 NC_007497.1 + 35052 0.72 0.096073
Target:  5'- aCAcGGAUGCGaaGCuGGCCGa-GGCGCg -3'
miRNA:   3'- -GUuCCUACGCggCG-CCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35081 0.7 0.136485
Target:  5'- --cGGccUGCGCCGCGaccuccGCCGCCuGUGCg -3'
miRNA:   3'- guuCCu-ACGCGGCGC------CGGCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35549 0.72 0.104254
Target:  5'- ---cGAcGCGCUGCGGaauGCCGGCGCu -3'
miRNA:   3'- guucCUaCGCGGCGCCgg-CGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35621 0.66 0.266356
Target:  5'- --cGGcAUGgGCCGgGGCaCGUCGGaGCu -3'
miRNA:   3'- guuCC-UACgCGGCgCCG-GCGGCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 35955 0.73 0.079285
Target:  5'- --uGGAUGCcgaacGCCGCGGCCG-CGGCu- -3'
miRNA:   3'- guuCCUACG-----CGGCGCCGGCgGCCGcg -5'
33033 3' -63.7 NC_007497.1 + 36037 0.72 0.096073
Target:  5'- --cGGAUacGCggaaGCCGCGGCCGC-GGCGUu -3'
miRNA:   3'- guuCCUA--CG----CGGCGCCGGCGgCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 36185 0.72 0.107124
Target:  5'- gGAGGAUGCGUgggcuggcguCGaCGGCCGgCGGCu- -3'
miRNA:   3'- gUUCCUACGCG----------GC-GCCGGCgGCCGcg -5'
33033 3' -63.7 NC_007497.1 + 36682 0.67 0.241267
Target:  5'- aCAGcGAUGC-CCaaGCGGUCGCCgaGGCGUa -3'
miRNA:   3'- -GUUcCUACGcGG--CGCCGGCGG--CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 36991 0.66 0.253557
Target:  5'- --cGGcgGCGCCGgaGGCgGaacaagcuUCGGCGCg -3'
miRNA:   3'- guuCCuaCGCGGCg-CCGgC--------GGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 37056 0.66 0.253557
Target:  5'- ---cGAUGcCGUCGaCGGCCGCCgaccaGGUGUa -3'
miRNA:   3'- guucCUAC-GCGGC-GCCGGCGG-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.