miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 34087 0.71 0.110068
Target:  5'- --cGGcagGgGCCGCGGCCGaCaggGGCGCg -3'
miRNA:   3'- guuCCua-CgCGGCGCCGGC-Gg--CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 33868 0.66 0.259892
Target:  5'- gAAGGggGCGaaCGCaGCCGa-GGCGCg -3'
miRNA:   3'- gUUCCuaCGCg-GCGcCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 33779 0.84 0.012325
Target:  5'- aCAAGGAUGCGaagGCGGaaGCCGGCGCa -3'
miRNA:   3'- -GUUCCUACGCgg-CGCCggCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 32836 0.66 0.266356
Target:  5'- -cAGGAgucCGCCGagaacGCCGCUgGGCGCg -3'
miRNA:   3'- guUCCUac-GCGGCgc---CGGCGG-CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 32562 0.8 0.025113
Target:  5'- --cGGAUgGCGUCGCGGCCgccGCCGGCGg -3'
miRNA:   3'- guuCCUA-CGCGGCGCCGG---CGGCCGCg -5'
33033 3' -63.7 NC_007497.1 + 32442 0.69 0.159999
Target:  5'- --cGGccccGUGaCGUGGCCGCCGGuCGCa -3'
miRNA:   3'- guuCCua--CGCgGCGCCGGCGGCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 31886 0.66 0.259892
Target:  5'- --uGGAgcCGCCGCuccGGCCGCaGGgGCg -3'
miRNA:   3'- guuCCUacGCGGCG---CCGGCGgCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 29629 0.69 0.17308
Target:  5'- --cGGAUaugucGCGCCGCuguauGGCCGCgaauuucugcaCGGCGUg -3'
miRNA:   3'- guuCCUA-----CGCGGCG-----CCGGCG-----------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 28620 0.67 0.212709
Target:  5'- gGAGGcgGCgGCgGCGGCgguggagaguCGCCGGacaGCc -3'
miRNA:   3'- gUUCCuaCG-CGgCGCCG----------GCGGCCg--CG- -5'
33033 3' -63.7 NC_007497.1 + 28346 0.67 0.218179
Target:  5'- --cGGAUGCGCCuuGGgUGCggcaGGUGCa -3'
miRNA:   3'- guuCCUACGCGGcgCCgGCGg---CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 27184 0.79 0.027111
Target:  5'- gCGGGGcgGCGCaucgGCGGCCguauccgcuccgcuGCCGGCGCg -3'
miRNA:   3'- -GUUCCuaCGCGg---CGCCGG--------------CGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 27121 0.68 0.197005
Target:  5'- cCGccGAUGCGCCGCc-CCGCCuuGCGCg -3'
miRNA:   3'- -GUucCUACGCGGCGccGGCGGc-CGCG- -5'
33033 3' -63.7 NC_007497.1 + 25876 0.66 0.253557
Target:  5'- cCAGGcGAagGCGaacgaaaaUGCGGCCGCCGugcagaccgucGCGCa -3'
miRNA:   3'- -GUUC-CUa-CGCg-------GCGCCGGCGGC-----------CGCG- -5'
33033 3' -63.7 NC_007497.1 + 23619 0.71 0.113088
Target:  5'- --cGGGca-GCaCGCGGCCGCCGGcCGUg -3'
miRNA:   3'- guuCCUacgCG-GCGCCGGCGGCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 23570 0.72 0.093483
Target:  5'- --uGGgcGCgGCgGCGGgCGCCGGCGUc -3'
miRNA:   3'- guuCCuaCG-CGgCGCCgGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 23220 0.72 0.096073
Target:  5'- uCGAGG--GCGUCGcCGGCUGCCGG-GCu -3'
miRNA:   3'- -GUUCCuaCGCGGC-GCCGGCGGCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 21506 0.73 0.086106
Target:  5'- uCGAGc--GCGCCGUGugaauGCUGCCGGCGCc -3'
miRNA:   3'- -GUUCcuaCGCGGCGC-----CGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 21037 0.66 0.286529
Target:  5'- aCGAuGA-GCGagCGCGGCCGCCGGa-- -3'
miRNA:   3'- -GUUcCUaCGCg-GCGCCGGCGGCCgcg -5'
33033 3' -63.7 NC_007497.1 + 19295 0.67 0.218179
Target:  5'- -cAGuAUGCGCaGCGGCCGUCgaacauuuGGCGUa -3'
miRNA:   3'- guUCcUACGCGgCGCCGGCGG--------CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 17196 0.69 0.168617
Target:  5'- aGAGGAaucGCGgccgccCCGCaGCCGCCcGCGCa -3'
miRNA:   3'- gUUCCUa--CGC------GGCGcCGGCGGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.