Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 27243 | 0.72 | 0.268984 |
Target: 5'- -gCAUgGAcGGCGUGCUGGUCGGUccgggGCa -3' miRNA: 3'- uaGUAgUUuUCGCGCGACCGGCCG-----CG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 35634 | 0.73 | 0.235705 |
Target: 5'- -aCG-CGAucGCGCGCggcaugGGCCGGgGCa -3' miRNA: 3'- uaGUaGUUuuCGCGCGa-----CCGGCCgCG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 480 | 0.76 | 0.14713 |
Target: 5'- --gAUCGu-GGCGCGCUGGCaagagcagcagugCGGCGCg -3' miRNA: 3'- uagUAGUuuUCGCGCGACCG-------------GCCGCG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 43044 | 0.77 | 0.116425 |
Target: 5'- -gCAUCG--AGCGCGCUgggcuucuauacaaGGCCGGCGUc -3' miRNA: 3'- uaGUAGUuuUCGCGCGA--------------CCGGCCGCG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 4985 | 0.78 | 0.095886 |
Target: 5'- gGUUcgCAcugaAAAGC-CGCUGGCCGGUGCg -3' miRNA: 3'- -UAGuaGU----UUUCGcGCGACCGGCCGCG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 34880 | 0.78 | 0.093131 |
Target: 5'- -gCGUCcGAGGCGuCGCUGGCguUGGCGCa -3' miRNA: 3'- uaGUAGuUUUCGC-GCGACCG--GCCGCG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 23875 | 0.84 | 0.039393 |
Target: 5'- cUCAUCc--GGCgugaaGCGCUGGCCGGCGCg -3' miRNA: 3'- uAGUAGuuuUCG-----CGCGACCGGCCGCG- -5' |
|||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 3224 | 1.09 | 0.00055 |
Target: 5'- cAUCAUCAAAAGCGCGCUGGCCGGCGCc -3' miRNA: 3'- -UAGUAGUUUUCGCGCGACCGGCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home