miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33036 5' -51.5 NC_007497.1 + 17074 0.73 0.465587
Target:  5'- gGGCGGaaccGAugGCGAUcCCGGCCGgAUGg -3'
miRNA:   3'- -CCGUUa---CUugCGUUA-GGCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 29369 0.66 0.868722
Target:  5'- cGGUuc-GAGCGCcacGUCgCGGCCG-ACGu -3'
miRNA:   3'- -CCGuuaCUUGCGu--UAG-GCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 1440 0.66 0.842834
Target:  5'- cGGcCAcgGAAagGCGAUCUGcacGCCGUGCu -3'
miRNA:   3'- -CC-GUuaCUUg-CGUUAGGC---CGGCAUGc -5'
33036 5' -51.5 NC_007497.1 + 37913 0.67 0.81482
Target:  5'- aGCGAUcGACGCucgaacgCCGGCCGcAUGa -3'
miRNA:   3'- cCGUUAcUUGCGuua----GGCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 41209 0.67 0.805057
Target:  5'- cGCucc-AACGC-AUCCGGCCGcACGu -3'
miRNA:   3'- cCGuuacUUGCGuUAGGCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 26313 0.68 0.773613
Target:  5'- uGGCGucgu-CGCGgcucggcGUCCGGCUGUACc -3'
miRNA:   3'- -CCGUuacuuGCGU-------UAGGCCGGCAUGc -5'
33036 5' -51.5 NC_007497.1 + 36112 0.68 0.764187
Target:  5'- cGGCcGUcGAcgccagcccACGCAuccUCCGGUCGUACu -3'
miRNA:   3'- -CCGuUA-CU---------UGCGUu--AGGCCGGCAUGc -5'
33036 5' -51.5 NC_007497.1 + 23620 0.69 0.687573
Target:  5'- gGGCAGc--ACGCGGccgCCGGCCGUGa- -3'
miRNA:   3'- -CCGUUacuUGCGUUa--GGCCGGCAUgc -5'
33036 5' -51.5 NC_007497.1 + 34858 0.71 0.608134
Target:  5'- cGCGGUcucGcGCGCGAUCaCGGCCGcaUACGg -3'
miRNA:   3'- cCGUUA---CuUGCGUUAG-GCCGGC--AUGC- -5'
33036 5' -51.5 NC_007497.1 + 42799 0.68 0.784962
Target:  5'- gGGCAGUugGAaauGCGCGAgucguUCCGGUCGggaACGc -3'
miRNA:   3'- -CCGUUA--CU---UGCGUU-----AGGCCGGCa--UGC- -5'
33036 5' -51.5 NC_007497.1 + 467 0.68 0.774653
Target:  5'- uGGCAA-GAGCaGCAGUgCGGCgCGcgguUACGg -3'
miRNA:   3'- -CCGUUaCUUG-CGUUAgGCCG-GC----AUGC- -5'
33036 5' -51.5 NC_007497.1 + 40852 0.69 0.720999
Target:  5'- cGGCAAUGGcaaagcuguauGCGCAA-CgGGCCG-GCa -3'
miRNA:   3'- -CCGUUACU-----------UGCGUUaGgCCGGCaUGc -5'
33036 5' -51.5 NC_007497.1 + 15232 0.69 0.687573
Target:  5'- cGGCGA-GAGCGCGcgCUGGauGUAUGc -3'
miRNA:   3'- -CCGUUaCUUGCGUuaGGCCggCAUGC- -5'
33036 5' -51.5 NC_007497.1 + 16339 0.7 0.664983
Target:  5'- cGCuguUGAACggaGCGcgCCGGCCGUcgGCGu -3'
miRNA:   3'- cCGuu-ACUUG---CGUuaGGCCGGCA--UGC- -5'
33036 5' -51.5 NC_007497.1 + 39338 0.71 0.619502
Target:  5'- cGCGugcuGCGCGAUCCGuacacggcgaaGCCGUACGu -3'
miRNA:   3'- cCGUuacuUGCGUUAGGC-----------CGGCAUGC- -5'
33036 5' -51.5 NC_007497.1 + 35199 0.71 0.585475
Target:  5'- aGGCGcgGAGCgaucGCGAUgCGGCUGcgGCGa -3'
miRNA:   3'- -CCGUuaCUUG----CGUUAgGCCGGCa-UGC- -5'
33036 5' -51.5 NC_007497.1 + 35769 0.73 0.507931
Target:  5'- aGGCGGUG-GCGCuGUCCGG-CGUAuCGg -3'
miRNA:   3'- -CCGUUACuUGCGuUAGGCCgGCAU-GC- -5'
33036 5' -51.5 NC_007497.1 + 26565 0.73 0.465587
Target:  5'- cGUGAUGAACGUGAcgucgcugCCGGCCGUcagcGCGg -3'
miRNA:   3'- cCGUUACUUGCGUUa-------GGCCGGCA----UGC- -5'
33036 5' -51.5 NC_007497.1 + 4607 0.78 0.264761
Target:  5'- gGGCGAaGGucgaucgUGCGGUCCGGUCGUGCGg -3'
miRNA:   3'- -CCGUUaCUu------GCGUUAGGCCGGCAUGC- -5'
33036 5' -51.5 NC_007497.1 + 1160 0.66 0.883909
Target:  5'- uGCAGUGAucaucGCGCGcgCUGccccucgugaccuGCCGUGCu -3'
miRNA:   3'- cCGUUACU-----UGCGUuaGGC-------------CGGCAUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.