Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33036 | 5' | -51.5 | NC_007497.1 | + | 33059 | 0.66 | 0.849957 |
Target: 5'- aGGCAAUGAGcCGCGugagcgaugaguUCCGucGCCG-ACGu -3' miRNA: 3'- -CCGUUACUU-GCGUu-----------AGGC--CGGCaUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 34858 | 0.71 | 0.608134 |
Target: 5'- cGCGGUcucGcGCGCGAUCaCGGCCGcaUACGg -3' miRNA: 3'- cCGUUA---CuUGCGUUAG-GCCGGC--AUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 34926 | 0.67 | 0.7951 |
Target: 5'- cGGCcGUGAucgcGCGCGAgacCgCGGCCGcGCa -3' miRNA: 3'- -CCGuUACU----UGCGUUa--G-GCCGGCaUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 35199 | 0.71 | 0.585475 |
Target: 5'- aGGCGcgGAGCgaucGCGAUgCGGCUGcgGCGa -3' miRNA: 3'- -CCGUuaCUUG----CGUUAgGCCGGCa-UGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 35769 | 0.73 | 0.507931 |
Target: 5'- aGGCGGUG-GCGCuGUCCGG-CGUAuCGg -3' miRNA: 3'- -CCGUUACuUGCGuUAGGCCgGCAU-GC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 36112 | 0.68 | 0.764187 |
Target: 5'- cGGCcGUcGAcgccagcccACGCAuccUCCGGUCGUACu -3' miRNA: 3'- -CCGuUA-CU---------UGCGUu--AGGCCGGCAUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 37895 | 0.66 | 0.860345 |
Target: 5'- gGGCuuUGAGCGCAuugaccAUCCGGaCGcaauCGg -3' miRNA: 3'- -CCGuuACUUGCGU------UAGGCCgGCau--GC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 37913 | 0.67 | 0.81482 |
Target: 5'- aGCGAUcGACGCucgaacgCCGGCCGcAUGa -3' miRNA: 3'- cCGUUAcUUGCGuua----GGCCGGCaUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 38208 | 0.66 | 0.876836 |
Target: 5'- cGGCGc-GAACGUGAUCCGGgaCGagGCGc -3' miRNA: 3'- -CCGUuaCUUGCGUUAGGCCg-GCa-UGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 38832 | 0.67 | 0.805057 |
Target: 5'- uGCGAUGAccacCGCGAUCgaGGCCG-GCa -3' miRNA: 3'- cCGUUACUu---GCGUUAGg-CCGGCaUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 39338 | 0.71 | 0.619502 |
Target: 5'- cGCGugcuGCGCGAUCCGuacacggcgaaGCCGUACGu -3' miRNA: 3'- cCGUuacuUGCGUUAGGC-----------CGGCAUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 40852 | 0.69 | 0.720999 |
Target: 5'- cGGCAAUGGcaaagcuguauGCGCAA-CgGGCCG-GCa -3' miRNA: 3'- -CCGUUACU-----------UGCGUUaGgCCGGCaUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 41209 | 0.67 | 0.805057 |
Target: 5'- cGCucc-AACGC-AUCCGGCCGcACGu -3' miRNA: 3'- cCGuuacUUGCGuUAGGCCGGCaUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 42799 | 0.68 | 0.784962 |
Target: 5'- gGGCAGUugGAaauGCGCGAgucguUCCGGUCGggaACGc -3' miRNA: 3'- -CCGUUA--CU---UGCGUU-----AGGCCGGCa--UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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