miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33039 5' -58.1 NC_007497.1 + 32566 0.66 0.5037
Target:  5'- cUGUCGGauggcgucGCGGCCGccgccGGCGGCAacGCGUa- -3'
miRNA:   3'- -ACAGCU--------CGUCGGU-----CUGCCGU--CGCAcu -5'
33039 5' -58.1 NC_007497.1 + 28623 0.66 0.483015
Target:  5'- gGUgGAgGCGGC--GGCGGCGGCGgugGAg -3'
miRNA:   3'- aCAgCU-CGUCGguCUGCCGUCGCa--CU- -5'
33039 5' -58.1 NC_007497.1 + 44457 0.66 0.472828
Target:  5'- cGUCcacaAGCGGCUgggcgaGGGCGGCaagaaggaacAGCGUGAc -3'
miRNA:   3'- aCAGc---UCGUCGG------UCUGCCG----------UCGCACU- -5'
33039 5' -58.1 NC_007497.1 + 35786 0.66 0.462749
Target:  5'- gGUCGAGacgauCAGCaAGGCGGUGGCGcUGu -3'
miRNA:   3'- aCAGCUC-----GUCGgUCUGCCGUCGC-ACu -5'
33039 5' -58.1 NC_007497.1 + 23287 0.66 0.461748
Target:  5'- gGUCGAcacgcugcugcagGCuGCCAG-CGGCAGCa--- -3'
miRNA:   3'- aCAGCU-------------CGuCGGUCuGCCGUCGcacu -5'
33039 5' -58.1 NC_007497.1 + 25454 0.66 0.452785
Target:  5'- -aUCGGcuGguGCUGGACGGCAguaGCGUGc -3'
miRNA:   3'- acAGCU--CguCGGUCUGCCGU---CGCACu -5'
33039 5' -58.1 NC_007497.1 + 17275 0.66 0.452785
Target:  5'- cUGcgCGGGCGGCUgcgGGGCGGCcGCGa-- -3'
miRNA:   3'- -ACa-GCUCGUCGG---UCUGCCGuCGCacu -5'
33039 5' -58.1 NC_007497.1 + 23581 0.67 0.423615
Target:  5'- gGUCGcGCuGCUGGgcGCGGCGGCGg-- -3'
miRNA:   3'- aCAGCuCGuCGGUC--UGCCGUCGCacu -5'
33039 5' -58.1 NC_007497.1 + 34404 0.67 0.42076
Target:  5'- gGUCGAGCgccAGCgAGugaagcaggcgcaaGCGGCGGCGa-- -3'
miRNA:   3'- aCAGCUCG---UCGgUC--------------UGCCGUCGCacu -5'
33039 5' -58.1 NC_007497.1 + 4098 0.67 0.404805
Target:  5'- --aCGcGGCGGCCgAGACGGCAcgGCGcGAa -3'
miRNA:   3'- acaGC-UCGUCGG-UCUGCCGU--CGCaCU- -5'
33039 5' -58.1 NC_007497.1 + 39436 0.68 0.368809
Target:  5'- --cCGAGguGCCGGACaugccggauguGGCGGCGa-- -3'
miRNA:   3'- acaGCUCguCGGUCUG-----------CCGUCGCacu -5'
33039 5' -58.1 NC_007497.1 + 36167 0.7 0.29172
Target:  5'- cGUCGA-CGGCCGG-CGGCuauuucaacgcgguGCGUGAu -3'
miRNA:   3'- aCAGCUcGUCGGUCuGCCGu-------------CGCACU- -5'
33039 5' -58.1 NC_007497.1 + 26250 0.7 0.288797
Target:  5'- cGUCGGGCcaugguauccGGCC-GACGGUcccGGCGUGc -3'
miRNA:   3'- aCAGCUCG----------UCGGuCUGCCG---UCGCACu -5'
33039 5' -58.1 NC_007497.1 + 40210 0.7 0.28807
Target:  5'- -aUCGcGGCAGCgCAGAUGGgcgcgaaCGGCGUGAa -3'
miRNA:   3'- acAGC-UCGUCG-GUCUGCC-------GUCGCACU- -5'
33039 5' -58.1 NC_007497.1 + 35346 0.71 0.235112
Target:  5'- cGUCGcuuGCAGCCGGGCGGCu-CGUc- -3'
miRNA:   3'- aCAGCu--CGUCGGUCUGCCGucGCAcu -5'
33039 5' -58.1 NC_007497.1 + 30214 0.71 0.22307
Target:  5'- -aUCGAGCGGC--GACGaCAGCGUGAa -3'
miRNA:   3'- acAGCUCGUCGguCUGCcGUCGCACU- -5'
33039 5' -58.1 NC_007497.1 + 31813 0.72 0.211556
Target:  5'- -aUCGccccuGCGGCCGGAgCGGCGGCGUc- -3'
miRNA:   3'- acAGCu----CGUCGGUCU-GCCGUCGCAcu -5'
33039 5' -58.1 NC_007497.1 + 19905 0.73 0.184993
Target:  5'- -aUCGAGUcaGGCCAGaccgucguGCGaGCAGCGUGGg -3'
miRNA:   3'- acAGCUCG--UCGGUC--------UGC-CGUCGCACU- -5'
33039 5' -58.1 NC_007497.1 + 35228 0.73 0.180047
Target:  5'- aGUCGAucGCAGCCuGACGgGCAGCa--- -3'
miRNA:   3'- aCAGCU--CGUCGGuCUGC-CGUCGcacu -5'
33039 5' -58.1 NC_007497.1 + 42237 0.74 0.15277
Target:  5'- -cUUGAGCAGCCGGugGGCAGgauCGUc- -3'
miRNA:   3'- acAGCUCGUCGGUCugCCGUC---GCAcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.