miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33040 3' -57.3 NC_007497.1 + 15091 0.66 0.549243
Target:  5'- --aCCUGuGCUuugcguugaaCCGCGUggcgCGCCGCuaCCCg -3'
miRNA:   3'- uaaGGAU-CGA----------GGUGCAa---GCGGCG--GGG- -5'
33040 3' -57.3 NC_007497.1 + 33012 0.66 0.549243
Target:  5'- --gCCUgauucAGCUCgCGCGcgUUGUCGCCCa -3'
miRNA:   3'- uaaGGA-----UCGAG-GUGCa-AGCGGCGGGg -5'
33040 3' -57.3 NC_007497.1 + 36617 0.66 0.527755
Target:  5'- -aUCg-AGCUCgGCGgccUCGCCGCagaCCg -3'
miRNA:   3'- uaAGgaUCGAGgUGCa--AGCGGCGg--GG- -5'
33040 3' -57.3 NC_007497.1 + 33994 0.66 0.517128
Target:  5'- -gUCCaucGCUgCCAgCGUgCGCgCGCCCCu -3'
miRNA:   3'- uaAGGau-CGA-GGU-GCAaGCG-GCGGGG- -5'
33040 3' -57.3 NC_007497.1 + 7270 0.67 0.448439
Target:  5'- cUUCCgAGUUCCccucgauGCcgauacucgcagcaaGUUCGCCGCCCUc -3'
miRNA:   3'- uAAGGaUCGAGG-------UG---------------CAAGCGGCGGGG- -5'
33040 3' -57.3 NC_007497.1 + 33239 0.67 0.44548
Target:  5'- -gUCCgacAGCUUCguGCGcUUCGCCGCCa- -3'
miRNA:   3'- uaAGGa--UCGAGG--UGC-AAGCGGCGGgg -5'
33040 3' -57.3 NC_007497.1 + 22925 0.68 0.397844
Target:  5'- --cCCgacgAGUcagggCCGCuGUcgUCGCCGCCCCg -3'
miRNA:   3'- uaaGGa---UCGa----GGUG-CA--AGCGGCGGGG- -5'
33040 3' -57.3 NC_007497.1 + 41164 0.7 0.312957
Target:  5'- --gCCgccGCaucgUCgGCGUUCGCCGCCCg -3'
miRNA:   3'- uaaGGau-CG----AGgUGCAAGCGGCGGGg -5'
33040 3' -57.3 NC_007497.1 + 36263 0.72 0.224134
Target:  5'- -cUCCUgAGCaucuUCCGac-UCGCCGCCCCa -3'
miRNA:   3'- uaAGGA-UCG----AGGUgcaAGCGGCGGGG- -5'
33040 3' -57.3 NC_007497.1 + 36769 0.73 0.212541
Target:  5'- -gUCC-GGCUCgACGccCGCCGCCUCg -3'
miRNA:   3'- uaAGGaUCGAGgUGCaaGCGGCGGGG- -5'
33040 3' -57.3 NC_007497.1 + 33391 0.74 0.180819
Target:  5'- uUUCC-GGCUCggaACGggCGCCGCCCg -3'
miRNA:   3'- uAAGGaUCGAGg--UGCaaGCGGCGGGg -5'
33040 3' -57.3 NC_007497.1 + 10981 1.09 0.000429
Target:  5'- cAUUCCUAGCUCCACGUUCGCCGCCCCu -3'
miRNA:   3'- -UAAGGAUCGAGGUGCAAGCGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.