miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33042 5' -50 NC_007497.1 + 26737 0.66 0.909015
Target:  5'- gCUCGGCGGUGCcUGUaccgAUGGCG-GCAc -3'
miRNA:   3'- -GAGUCGUCAUGuGCG----UAUUGCaCGUc -5'
33042 5' -50 NC_007497.1 + 2428 0.66 0.894536
Target:  5'- gCUUAGCAGUGCcgguGCGCcgcugGGCGUucgcGCGGc -3'
miRNA:   3'- -GAGUCGUCAUG----UGCGua---UUGCA----CGUC- -5'
33042 5' -50 NC_007497.1 + 8520 0.66 0.886845
Target:  5'- cCUUGGCAGcuUugGCuaucccguucgGCGUGACGUGCGa -3'
miRNA:   3'- -GAGUCGUC--AugUG-----------CGUAUUGCACGUc -5'
33042 5' -50 NC_007497.1 + 28866 0.66 0.88606
Target:  5'- gCUCGGCGGUGuCGCGCA-AAUGUugagcccGCAu -3'
miRNA:   3'- -GAGUCGUCAU-GUGCGUaUUGCA-------CGUc -5'
33042 5' -50 NC_007497.1 + 9541 0.67 0.870589
Target:  5'- aUCGGgAGUACACGCG-GACG-GCc- -3'
miRNA:   3'- gAGUCgUCAUGUGCGUaUUGCaCGuc -5'
33042 5' -50 NC_007497.1 + 32588 0.67 0.841357
Target:  5'- uCUCGGCGG-ACugGCGggcggccugucggaUGGCGUcGCGGc -3'
miRNA:   3'- -GAGUCGUCaUGugCGU--------------AUUGCA-CGUC- -5'
33042 5' -50 NC_007497.1 + 36792 0.68 0.825221
Target:  5'- --aAGCaAGUACAgcCGCGUGA-GUGCAGa -3'
miRNA:   3'- gagUCG-UCAUGU--GCGUAUUgCACGUC- -5'
33042 5' -50 NC_007497.1 + 28185 0.68 0.812431
Target:  5'- aCUCGGUAGccgaACACGCcgGACGacgggucacucuucUGCAGc -3'
miRNA:   3'- -GAGUCGUCa---UGUGCGuaUUGC--------------ACGUC- -5'
33042 5' -50 NC_007497.1 + 33516 0.68 0.805393
Target:  5'- -gCAGCAGcACGCGCc---CGUGCAa -3'
miRNA:   3'- gaGUCGUCaUGUGCGuauuGCACGUc -5'
33042 5' -50 NC_007497.1 + 29528 0.7 0.707555
Target:  5'- -aUAGCAGUcgaGCACGC----CGUGCAGa -3'
miRNA:   3'- gaGUCGUCA---UGUGCGuauuGCACGUC- -5'
33042 5' -50 NC_007497.1 + 39215 0.7 0.684543
Target:  5'- uUCAGCAGgccgccgccgACGCGCuucguCGUGUAGa -3'
miRNA:   3'- gAGUCGUCa---------UGUGCGuauu-GCACGUC- -5'
33042 5' -50 NC_007497.1 + 25454 0.71 0.626249
Target:  5'- aUCGGCuGGUGCugGacggcaGUAGCGUGCGc -3'
miRNA:   3'- gAGUCG-UCAUGugCg-----UAUUGCACGUc -5'
33042 5' -50 NC_007497.1 + 32030 0.72 0.568082
Target:  5'- uUCGGCgaugGGUACACGCA--GCGcGCAGc -3'
miRNA:   3'- gAGUCG----UCAUGUGCGUauUGCaCGUC- -5'
33042 5' -50 NC_007497.1 + 32322 0.73 0.556584
Target:  5'- -gCAGCGGUGCugGUGcUGGCGgGCAGu -3'
miRNA:   3'- gaGUCGUCAUGugCGU-AUUGCaCGUC- -5'
33042 5' -50 NC_007497.1 + 2893 0.75 0.436306
Target:  5'- -gCAcGCGGUGCugGCGcAugGUGCGGa -3'
miRNA:   3'- gaGU-CGUCAUGugCGUaUugCACGUC- -5'
33042 5' -50 NC_007497.1 + 26951 0.76 0.386756
Target:  5'- -gCAGCuGUAC-CGCGUcgucAGCGUGCAGg -3'
miRNA:   3'- gaGUCGuCAUGuGCGUA----UUGCACGUC- -5'
33042 5' -50 NC_007497.1 + 12267 1.1 0.002127
Target:  5'- uCUCAGCAGUACACGCAUAACGUGCAGa -3'
miRNA:   3'- -GAGUCGUCAUGUGCGUAUUGCACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.