miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33043 5' -56.3 NC_007497.1 + 4441 0.66 0.616486
Target:  5'- cCGCGG-CU--ACaaGAUGCGUAGCGAg -3'
miRNA:   3'- -GCGCCaGAcgUGgaCUAUGCGUCGCU- -5'
33043 5' -56.3 NC_007497.1 + 18777 0.66 0.605389
Target:  5'- gGCGGcgaagCUGCGCa-GAUACGcCGGCa- -3'
miRNA:   3'- gCGCCa----GACGUGgaCUAUGC-GUCGcu -5'
33043 5' -56.3 NC_007497.1 + 35824 0.67 0.550431
Target:  5'- aGCGG-CUGCcgcguuGCUUgcgcGAUGCGCAGCa- -3'
miRNA:   3'- gCGCCaGACG------UGGA----CUAUGCGUCGcu -5'
33043 5' -56.3 NC_007497.1 + 36716 0.67 0.539604
Target:  5'- uGCGcGUCUGCACUc---ACGCGGCu- -3'
miRNA:   3'- gCGC-CAGACGUGGacuaUGCGUCGcu -5'
33043 5' -56.3 NC_007497.1 + 11239 0.67 0.539604
Target:  5'- uCGCGGUCgGgGCCaaUGAUGCG-AGCa- -3'
miRNA:   3'- -GCGCCAGaCgUGG--ACUAUGCgUCGcu -5'
33043 5' -56.3 NC_007497.1 + 13534 0.67 0.539604
Target:  5'- gCGCGGaaggUCgaaCACCUGAUgcaagaccaGCGCAGCa- -3'
miRNA:   3'- -GCGCC----AGac-GUGGACUA---------UGCGUCGcu -5'
33043 5' -56.3 NC_007497.1 + 25134 0.67 0.518178
Target:  5'- aGaCGGcUCUGCGCCaGAgACGCGGUa- -3'
miRNA:   3'- gC-GCC-AGACGUGGaCUaUGCGUCGcu -5'
33043 5' -56.3 NC_007497.1 + 39272 0.68 0.476413
Target:  5'- gGCGGcCUGCugaauccggaGCC-GAUGCGC-GCGAu -3'
miRNA:   3'- gCGCCaGACG----------UGGaCUAUGCGuCGCU- -5'
33043 5' -56.3 NC_007497.1 + 19057 0.68 0.446213
Target:  5'- aGCGGUaucgGCugCUGcgACGCGGUcaGAa -3'
miRNA:   3'- gCGCCAga--CGugGACuaUGCGUCG--CU- -5'
33043 5' -56.3 NC_007497.1 + 39035 0.69 0.436386
Target:  5'- aGCGGUCgGCGCaCUGG-AgGguGCGGa -3'
miRNA:   3'- gCGCCAGaCGUG-GACUaUgCguCGCU- -5'
33043 5' -56.3 NC_007497.1 + 23567 0.74 0.198025
Target:  5'- gCGCGGcggcgggcgccggcgUCgUGCACCUGAUcaGCGCGcGCGAg -3'
miRNA:   3'- -GCGCC---------------AG-ACGUGGACUA--UGCGU-CGCU- -5'
33043 5' -56.3 NC_007497.1 + 11380 0.77 0.13688
Target:  5'- aGUGGgg-GCGCCUGAagucgGCGCGGCGAc -3'
miRNA:   3'- gCGCCagaCGUGGACUa----UGCGUCGCU- -5'
33043 5' -56.3 NC_007497.1 + 13552 1.09 0.000602
Target:  5'- uCGCGGUCUGCACCUGAUACGCAGCGAa -3'
miRNA:   3'- -GCGCCAGACGUGGACUAUGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.