Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33044 | 5' | -51.1 | NC_007497.1 | + | 8542 | 0.66 | 0.829593 |
|
Target: 5'- -cGCCGCGCAaaaugcggcugaUCGUCggcugcggaacuccAGUGucGCGUGAa -3' miRNA: 3'- gaCGGUGCGU------------AGUAG--------------UCAUu-CGCACU- -5' |
|||||||
| 33044 | 5' | -51.1 | NC_007497.1 | + | 15748 | 0.67 | 0.792927 |
|
Target: 5'- uCU-CCACcgGCGUCAUCGGUGGGUGcucgGAg -3' miRNA: 3'- -GAcGGUG--CGUAGUAGUCAUUCGCa---CU- -5' |
|||||||
| 33044 | 5' | -51.1 | NC_007497.1 | + | 16695 | 0.68 | 0.739456 |
|
Target: 5'- uUGCCACGCuUCuUCcGUGAaCGUGAu -3' miRNA: 3'- gACGGUGCGuAGuAGuCAUUcGCACU- -5' |
|||||||
| 33044 | 5' | -51.1 | NC_007497.1 | + | 19070 | 0.7 | 0.613551 |
|
Target: 5'- gCUGCgACGCG--GUCAGaagugGAGCGUGGu -3' miRNA: 3'- -GACGgUGCGUagUAGUCa----UUCGCACU- -5' |
|||||||
| 33044 | 5' | -51.1 | NC_007497.1 | + | 14334 | 1.09 | 0.001732 |
|
Target: 5'- gCUGCCACGCAUCAUCAGUAAGCGUGAu -3' miRNA: 3'- -GACGGUGCGUAGUAGUCAUUCGCACU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home