miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33045 3' -53.9 NC_007497.1 + 13803 0.71 0.390405
Target:  5'- cGCA-GGGGCCGCcG-CAUggGCCGCa -3'
miRNA:   3'- uCGUaUCUCGGCGcCaGUAaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 4147 0.66 0.72467
Target:  5'- cGGCAcuc-GUCGaCGGUCA--UGCCGCc -3'
miRNA:   3'- -UCGUaucuCGGC-GCCAGUaaACGGCG- -5'
33045 3' -53.9 NC_007497.1 + 19761 0.66 0.702547
Target:  5'- aAGCAUgcGGAGCCGacgaCGGaCAUgcaagugGUCGCa -3'
miRNA:   3'- -UCGUA--UCUCGGC----GCCaGUAaa-----CGGCG- -5'
33045 3' -53.9 NC_007497.1 + 195 0.66 0.702547
Target:  5'- gAGC-UGGAGCCGUcuGUC----GCCGCg -3'
miRNA:   3'- -UCGuAUCUCGGCGc-CAGuaaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 34372 0.66 0.69137
Target:  5'- aGGCGU-GAGCUGcCGG-UAUUUGUCGa -3'
miRNA:   3'- -UCGUAuCUCGGC-GCCaGUAAACGGCg -5'
33045 3' -53.9 NC_007497.1 + 18542 0.67 0.646173
Target:  5'- aGGCGcuuGAGCCGC--UUAUccgUGCCGCa -3'
miRNA:   3'- -UCGUau-CUCGGCGccAGUAa--ACGGCG- -5'
33045 3' -53.9 NC_007497.1 + 13905 0.67 0.634811
Target:  5'- cGCAUGGGucGCCGCaGGggcc--GCCGCa -3'
miRNA:   3'- uCGUAUCU--CGGCG-CCaguaaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 22931 0.68 0.600751
Target:  5'- gAGUc-AGGGCCGCuGUCGUc-GCCGCc -3'
miRNA:   3'- -UCGuaUCUCGGCGcCAGUAaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 13692 0.68 0.600751
Target:  5'- cGCAcgGGAcGCCGCaugGGUCGccgcacggGCCGCa -3'
miRNA:   3'- uCGUa-UCU-CGGCG---CCAGUaaa-----CGGCG- -5'
33045 3' -53.9 NC_007497.1 + 25065 0.68 0.589442
Target:  5'- uGCGuUAGAGCCGCuGUCGUUcggGCUa- -3'
miRNA:   3'- uCGU-AUCUCGGCGcCAGUAAa--CGGcg -5'
33045 3' -53.9 NC_007497.1 + 13770 0.68 0.57817
Target:  5'- cGCAUGGGucGCCGCaGGg-----GCCGCa -3'
miRNA:   3'- uCGUAUCU--CGGCG-CCaguaaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 13638 0.68 0.57817
Target:  5'- cGCAUGG-GCCGCcG-CAcggGCCGCa -3'
miRNA:   3'- uCGUAUCuCGGCGcCaGUaaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 34850 0.68 0.577046
Target:  5'- uGCGc--GGCCGCGGUCucgcgcgcgaucacgGCCGCa -3'
miRNA:   3'- uCGUaucUCGGCGCCAGuaaa-----------CGGCG- -5'
33045 3' -53.9 NC_007497.1 + 13860 0.71 0.409337
Target:  5'- cGCAUGG-GCCGCacGGgacgccgCAUggGCCGCc -3'
miRNA:   3'- uCGUAUCuCGGCG--CCa------GUAaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 34661 0.7 0.45497
Target:  5'- gAGCGU---GCCGCGGUCGcgcaaacggcgGCCGCc -3'
miRNA:   3'- -UCGUAucuCGGCGCCAGUaaa--------CGGCG- -5'
33045 3' -53.9 NC_007497.1 + 8682 0.7 0.44886
Target:  5'- cGCGUc-GGCCGCccGGUCGUgugGCUGCg -3'
miRNA:   3'- uCGUAucUCGGCG--CCAGUAaa-CGGCG- -5'
33045 3' -53.9 NC_007497.1 + 4263 0.71 0.42883
Target:  5'- cGCAUGGcgccggaauuGGCgGCGaaucGUCcgUUGCCGCa -3'
miRNA:   3'- uCGUAUC----------UCGgCGC----CAGuaAACGGCG- -5'
33045 3' -53.9 NC_007497.1 + 31960 0.72 0.354301
Target:  5'- -uCGUGGGGCgCGCGGaCAUgaucGCCGCa -3'
miRNA:   3'- ucGUAUCUCG-GCGCCaGUAaa--CGGCG- -5'
33045 3' -53.9 NC_007497.1 + 26718 0.73 0.304698
Target:  5'- cGCAUGGGacGCCGCGGaCAag-GCCGUu -3'
miRNA:   3'- uCGUAUCU--CGGCGCCaGUaaaCGGCG- -5'
33045 3' -53.9 NC_007497.1 + 25193 0.66 0.69137
Target:  5'- uGGCGcAGAGCCGUcucccGUCGUUuccaucaaUGCCGg -3'
miRNA:   3'- -UCGUaUCUCGGCGc----CAGUAA--------ACGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.