miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 5' -60.1 NC_007497.1 + 31306 0.66 0.419315
Target:  5'- -gGCGGCgCUUCCGaCGAUGgcucgAC-GGCa -3'
miRNA:   3'- agCGCCG-GGAGGC-GCUACa----UGaCCGc -5'
33046 5' -60.1 NC_007497.1 + 13740 0.66 0.401068
Target:  5'- gUGCGGCCC-CUGCGgcGUccccuGC-GGCGu -3'
miRNA:   3'- aGCGCCGGGaGGCGCuaCA-----UGaCCGC- -5'
33046 5' -60.1 NC_007497.1 + 13806 0.66 0.401068
Target:  5'- gUGCGGCCC-CUGCGgcGUccccuGC-GGCGu -3'
miRNA:   3'- aGCGCCGGGaGGCGCuaCA-----UGaCCGC- -5'
33046 5' -60.1 NC_007497.1 + 30767 0.66 0.392136
Target:  5'- gUCGCGGCgUagUCGCGgcGUuaAUUGGCGa -3'
miRNA:   3'- -AGCGCCGgGa-GGCGCuaCA--UGACCGC- -5'
33046 5' -60.1 NC_007497.1 + 27721 0.67 0.374665
Target:  5'- aUCGCGcGCUa-CUGCGAUGUGaUGGUGu -3'
miRNA:   3'- -AGCGC-CGGgaGGCGCUACAUgACCGC- -5'
33046 5' -60.1 NC_007497.1 + 11624 0.67 0.366129
Target:  5'- aUUGCGGCgC-CCaGCGAUG-AgUGGCGu -3'
miRNA:   3'- -AGCGCCGgGaGG-CGCUACaUgACCGC- -5'
33046 5' -60.1 NC_007497.1 + 9640 0.67 0.341336
Target:  5'- -gGCGcGCCggCCGCGAcGUcgGCUGGCu -3'
miRNA:   3'- agCGC-CGGgaGGCGCUaCA--UGACCGc -5'
33046 5' -60.1 NC_007497.1 + 32704 0.67 0.341336
Target:  5'- aUCGCGGaUCUCgCGCGGUucGCUGcGCGa -3'
miRNA:   3'- -AGCGCCgGGAG-GCGCUAcaUGAC-CGC- -5'
33046 5' -60.1 NC_007497.1 + 9613 0.67 0.34053
Target:  5'- aUUGuCGGCCgUCCGCG-UGUACUcccgauuuccuucGGCc -3'
miRNA:   3'- -AGC-GCCGGgAGGCGCuACAUGA-------------CCGc -5'
33046 5' -60.1 NC_007497.1 + 7143 0.68 0.333346
Target:  5'- -aGCuGCCCUCC-CGGUaugaagACUGGCGg -3'
miRNA:   3'- agCGcCGGGAGGcGCUAca----UGACCGC- -5'
33046 5' -60.1 NC_007497.1 + 4065 0.68 0.310204
Target:  5'- cUCGCGuaCCgCCGCGAUGaGCUcGCGc -3'
miRNA:   3'- -AGCGCcgGGaGGCGCUACaUGAcCGC- -5'
33046 5' -60.1 NC_007497.1 + 39629 0.68 0.30203
Target:  5'- uUCGCGGCauuggcaCCgcCCGCGAUGUACguaaGCa -3'
miRNA:   3'- -AGCGCCG-------GGa-GGCGCUACAUGac--CGc -5'
33046 5' -60.1 NC_007497.1 + 15130 1.09 0.000252
Target:  5'- aUCGCGGCCCUCCGCGAUGUACUGGCGg -3'
miRNA:   3'- -AGCGCCGGGAGGCGCUACAUGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.