Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33047 | 3' | -53.9 | NC_007497.1 | + | 15560 | 1.11 | 0.000753 |
Target: 5'- gCGCAGAGAAACCAGACGCAGCCGAUCg -3' miRNA: 3'- -GCGUCUCUUUGGUCUGCGUCGGCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 12114 | 0.75 | 0.244525 |
Target: 5'- cCGCAuucGAGu-ACUcGGCGCGGCCGAUCa -3' miRNA: 3'- -GCGU---CUCuuUGGuCUGCGUCGGCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 32939 | 0.73 | 0.325382 |
Target: 5'- gCGCGGAGGccGACCAGcucgaacgugaACGCGGCuaucuCGAUCa -3' miRNA: 3'- -GCGUCUCU--UUGGUC-----------UGCGUCG-----GCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 9803 | 0.72 | 0.359346 |
Target: 5'- aGUAGAuaucGAuAACCuGcCGCAGCCGAUCg -3' miRNA: 3'- gCGUCU----CU-UUGGuCuGCGUCGGCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 14447 | 0.72 | 0.359346 |
Target: 5'- cCGCAGGG----CGGGCGCGGuuGAUCa -3' miRNA: 3'- -GCGUCUCuuugGUCUGCGUCggCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 21552 | 0.71 | 0.405165 |
Target: 5'- uGCGGcAGAGGCgUGGGCGCAGCUcGUCg -3' miRNA: 3'- gCGUC-UCUUUG-GUCUGCGUCGGcUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 10545 | 0.71 | 0.414761 |
Target: 5'- uGUcGAGcAGCCAGACgGCAGCgUGAUCg -3' miRNA: 3'- gCGuCUCuUUGGUCUG-CGUCG-GCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 16148 | 0.7 | 0.475121 |
Target: 5'- gGCGGAuuGAGCCAGACGCGcCCGcgCc -3' miRNA: 3'- gCGUCUc-UUUGGUCUGCGUcGGCuaG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 3516 | 0.69 | 0.539552 |
Target: 5'- gCGguGAGGGA-CGGugGCGGCUGGc- -3' miRNA: 3'- -GCguCUCUUUgGUCugCGUCGGCUag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 32829 | 0.69 | 0.561712 |
Target: 5'- cCGCcGAGAAcgccGCUGGGCGC-GCCGAg- -3' miRNA: 3'- -GCGuCUCUU----UGGUCUGCGuCGGCUag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 44608 | 0.68 | 0.594251 |
Target: 5'- aGCAGccggcgccagcccAGAAGCCGGACGgGuUCGAUCu -3' miRNA: 3'- gCGUC-------------UCUUUGGUCUGCgUcGGCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 959 | 0.68 | 0.595379 |
Target: 5'- aCGCGGuaauggcuGAAGCCcgagcAGuACGCGGCCGAc- -3' miRNA: 3'- -GCGUCu-------CUUUGG-----UC-UGCGUCGGCUag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 15286 | 0.68 | 0.616872 |
Target: 5'- gCGCGGGGGcuucacgAGCUcGugGCGGgCGAUCc -3' miRNA: 3'- -GCGUCUCU-------UUGGuCugCGUCgGCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 26403 | 0.68 | 0.618005 |
Target: 5'- gCGCAccGAGAucugguacAGCCGGACGCcgAGCCGc-- -3' miRNA: 3'- -GCGU--CUCU--------UUGGUCUGCG--UCGGCuag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 2408 | 0.68 | 0.618005 |
Target: 5'- gCGCA-AGAAACCGauGGCGC-GCgGAUCg -3' miRNA: 3'- -GCGUcUCUUUGGU--CUGCGuCGgCUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 8433 | 0.67 | 0.628209 |
Target: 5'- gGCAGAGcAAGCUuucacgcgacacuGGAguucCGCAGCCGAcgaUCa -3' miRNA: 3'- gCGUCUC-UUUGG-------------UCU----GCGUCGGCU---AG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 35197 | 0.67 | 0.640684 |
Target: 5'- gCGCGGAGcGAUCGcGAUGCGGCUGcggCg -3' miRNA: 3'- -GCGUCUCuUUGGU-CUGCGUCGGCua-G- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 10804 | 0.67 | 0.640684 |
Target: 5'- gGCAGAGgcAgCGGugGCgaaucucgGGCCGAa- -3' miRNA: 3'- gCGUCUCuuUgGUCugCG--------UCGGCUag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 41972 | 0.67 | 0.640684 |
Target: 5'- aGCGGAGcAAGCCGaGCGC-GCCGcuUCa -3' miRNA: 3'- gCGUCUC-UUUGGUcUGCGuCGGCu-AG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 8243 | 0.67 | 0.652015 |
Target: 5'- uCGCuGAGAAGCgCGGugGCAGUa-GUUg -3' miRNA: 3'- -GCGuCUCUUUG-GUCugCGUCGgcUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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