miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33047 5' -54.4 NC_007497.1 + 34597 0.66 0.700785
Target:  5'- uUGCGCGAccGCGGCA-CGCU-CCg- -3'
miRNA:   3'- cAUGCGCUuaCGCUGUcGCGAaGGga -5'
33047 5' -54.4 NC_007497.1 + 17761 0.66 0.700785
Target:  5'- -aGCGCGAAUucgGCGAgAcGUGCcUCCCc -3'
miRNA:   3'- caUGCGCUUA---CGCUgU-CGCGaAGGGa -5'
33047 5' -54.4 NC_007497.1 + 13765 0.66 0.689638
Target:  5'- cGUGCgGCGAcccAUGCGGCGucccGUGCggcCCCUg -3'
miRNA:   3'- -CAUG-CGCU---UACGCUGU----CGCGaa-GGGA- -5'
33047 5' -54.4 NC_007497.1 + 40192 0.66 0.68852
Target:  5'- -gGCGCGAAcgGCGugAagccgcuGCGCgaUCCCg -3'
miRNA:   3'- caUGCGCUUa-CGCugU-------CGCGa-AGGGa -5'
33047 5' -54.4 NC_007497.1 + 3073 0.66 0.678432
Target:  5'- aGUGCGauuCGAAUGuCGAuCAGCGCgUCgCCg -3'
miRNA:   3'- -CAUGC---GCUUAC-GCU-GUCGCGaAG-GGa -5'
33047 5' -54.4 NC_007497.1 + 3795 0.66 0.678432
Target:  5'- -gGCGUGAGaacCGGCGGCGCaucgaUCCCa -3'
miRNA:   3'- caUGCGCUUac-GCUGUCGCGa----AGGGa -5'
33047 5' -54.4 NC_007497.1 + 36702 0.66 0.676185
Target:  5'- cGUACGCGAgcuuGUGCGcgucugcacucacGCGGCuguacuuGCUUCUCg -3'
miRNA:   3'- -CAUGCGCU----UACGC-------------UGUCG-------CGAAGGGa -5'
33047 5' -54.4 NC_007497.1 + 28076 0.66 0.66718
Target:  5'- uUACGcCGAAUGCGcACAGCucGCUgaUCgCCg -3'
miRNA:   3'- cAUGC-GCUUACGC-UGUCG--CGA--AG-GGa -5'
33047 5' -54.4 NC_007497.1 + 34800 0.66 0.655893
Target:  5'- -gACGCGcuacGCGGCGGCGCU-CgCUg -3'
miRNA:   3'- caUGCGCuua-CGCUGUCGCGAaGgGA- -5'
33047 5' -54.4 NC_007497.1 + 44304 0.67 0.644583
Target:  5'- cGUugGCGAucaaccGCGGCGGUGCcgCCg- -3'
miRNA:   3'- -CAugCGCUua----CGCUGUCGCGaaGGga -5'
33047 5' -54.4 NC_007497.1 + 13699 0.67 0.621937
Target:  5'- cGUGCgGCGGcccAUGCGGCGGCccGCUcUUCCUc -3'
miRNA:   3'- -CAUG-CGCU---UACGCUGUCG--CGA-AGGGA- -5'
33047 5' -54.4 NC_007497.1 + 15867 0.67 0.610623
Target:  5'- cUGCGCugcaGAccuguucaacGUGCGACGGCGCccaCCCg -3'
miRNA:   3'- cAUGCG----CU----------UACGCUGUCGCGaa-GGGa -5'
33047 5' -54.4 NC_007497.1 + 35149 0.67 0.599329
Target:  5'- -cGCGCcuucucaaGAGacaccagcGCGGCAGCGCUUUCCUc -3'
miRNA:   3'- caUGCG--------CUUa-------CGCUGUCGCGAAGGGA- -5'
33047 5' -54.4 NC_007497.1 + 42979 0.68 0.565662
Target:  5'- -gACGCacucGCGGCAGCGCgggUUCCg -3'
miRNA:   3'- caUGCGcuuaCGCUGUCGCGa--AGGGa -5'
33047 5' -54.4 NC_007497.1 + 14146 0.68 0.532505
Target:  5'- -aACGCcGAUGacauGACAGCGCUUCgCa -3'
miRNA:   3'- caUGCGcUUACg---CUGUCGCGAAGgGa -5'
33047 5' -54.4 NC_007497.1 + 31320 0.69 0.521604
Target:  5'- -gGCGUGuccUGCugGGCGGCGCUUCCg- -3'
miRNA:   3'- caUGCGCuu-ACG--CUGUCGCGAAGGga -5'
33047 5' -54.4 NC_007497.1 + 16742 0.7 0.45826
Target:  5'- -gACGCGGucacGCGAgCGGCGCgcUCCCg -3'
miRNA:   3'- caUGCGCUua--CGCU-GUCGCGa-AGGGa -5'
33047 5' -54.4 NC_007497.1 + 2546 0.72 0.362725
Target:  5'- cGUGCGCGccgGCGGCcgcGGCGCaUCCUUg -3'
miRNA:   3'- -CAUGCGCuuaCGCUG---UCGCGaAGGGA- -5'
33047 5' -54.4 NC_007497.1 + 36698 0.72 0.328576
Target:  5'- cGU-CGCGAAUucgGCGACAGCGaugCCCa -3'
miRNA:   3'- -CAuGCGCUUA---CGCUGUCGCgaaGGGa -5'
33047 5' -54.4 NC_007497.1 + 15526 1.07 0.001113
Target:  5'- cGUACGCGAAUGCGACAGCGCUUCCCUu -3'
miRNA:   3'- -CAUGCGCUUACGCUGUCGCGAAGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.