miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33048 5' -52.7 NC_007497.1 + 36592 0.66 0.798935
Target:  5'- -aUCGUGUGcCGGCCCGUacgccUCGGCGa -3'
miRNA:   3'- uaAGCGCGUaGUUGGGCAac---AGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 42371 0.66 0.798935
Target:  5'- -cUCGCGUcucgCGACCCGUgccaccauUCAGCu -3'
miRNA:   3'- uaAGCGCGua--GUUGGGCAac------AGUCGc -5'
33048 5' -52.7 NC_007497.1 + 17451 0.66 0.78879
Target:  5'- -aUCGUGaAUC-ACCCGaaaugGUCGGCGg -3'
miRNA:   3'- uaAGCGCgUAGuUGGGCaa---CAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 42009 0.66 0.784682
Target:  5'- -cUCGCGCGccggCAACUCGaucuuguccccgGUCGGCGu -3'
miRNA:   3'- uaAGCGCGUa---GUUGGGCaa----------CAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 28593 0.66 0.778468
Target:  5'- -aUC-CGCuUCAACCCGgauUCGGCGu -3'
miRNA:   3'- uaAGcGCGuAGUUGGGCaacAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 19257 0.66 0.778468
Target:  5'- -cUCGCGU-UCAGCCU-UUGUCAGgCGu -3'
miRNA:   3'- uaAGCGCGuAGUUGGGcAACAGUC-GC- -5'
33048 5' -52.7 NC_007497.1 + 42150 0.66 0.757344
Target:  5'- --cCGCGcCAUCGACUCGccGUCgAGCa -3'
miRNA:   3'- uaaGCGC-GUAGUUGGGCaaCAG-UCGc -5'
33048 5' -52.7 NC_007497.1 + 29928 0.66 0.746567
Target:  5'- cGUUCGUcCAUaaaaAACCCGccaGUCGGCGg -3'
miRNA:   3'- -UAAGCGcGUAg---UUGGGCaa-CAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 28856 0.67 0.74004
Target:  5'- -gUCGCGCAaauguugagcccgcaUCAGCCCGgccUGgcuGGCGu -3'
miRNA:   3'- uaAGCGCGU---------------AGUUGGGCa--ACag-UCGC- -5'
33048 5' -52.7 NC_007497.1 + 3947 0.67 0.735664
Target:  5'- cUUCGUgccgGCGUCGACCCGca-UCGGCc -3'
miRNA:   3'- uAAGCG----CGUAGUUGGGCaacAGUCGc -5'
33048 5' -52.7 NC_007497.1 + 41243 0.67 0.724649
Target:  5'- --cCGCGCca-AGCCgGUgGUCAGCGc -3'
miRNA:   3'- uaaGCGCGuagUUGGgCAaCAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 31538 0.67 0.724649
Target:  5'- -aUCGCGUccCAACuugguCCGgcGUCAGCGu -3'
miRNA:   3'- uaAGCGCGuaGUUG-----GGCaaCAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 1143 0.67 0.713533
Target:  5'- cUUCGCGCGgaUCAugCCGgccUGccCAGCa -3'
miRNA:   3'- uAAGCGCGU--AGUugGGCa--ACa-GUCGc -5'
33048 5' -52.7 NC_007497.1 + 3605 0.67 0.691054
Target:  5'- -aUCGgGCGUguagAACgUGUUGUCGGCGa -3'
miRNA:   3'- uaAGCgCGUAg---UUGgGCAACAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 44428 0.68 0.668328
Target:  5'- uUUCGcCGCAUCGAUCCGcaauuUCGGCu -3'
miRNA:   3'- uAAGC-GCGUAGUUGGGCaac--AGUCGc -5'
33048 5' -52.7 NC_007497.1 + 2254 0.68 0.668328
Target:  5'- uAUUUGCGCGU--GCCCGgUGUCuGCc -3'
miRNA:   3'- -UAAGCGCGUAguUGGGCaACAGuCGc -5'
33048 5' -52.7 NC_007497.1 + 26955 0.68 0.633992
Target:  5'- --cCGCGCAgcuguACCgCGUcGUCAGCGu -3'
miRNA:   3'- uaaGCGCGUagu--UGG-GCAaCAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 37662 0.69 0.622528
Target:  5'- -aUCGCGUggaAUCGACCggcaUGUucucUGUCGGCGg -3'
miRNA:   3'- uaAGCGCG---UAGUUGG----GCA----ACAGUCGC- -5'
33048 5' -52.7 NC_007497.1 + 39197 0.73 0.397297
Target:  5'- --gCGCGCAUCGGCuCCGgauUCAGCa -3'
miRNA:   3'- uaaGCGCGUAGUUG-GGCaacAGUCGc -5'
33048 5' -52.7 NC_007497.1 + 29016 0.75 0.271854
Target:  5'- ---aGCGaaCGUCAGCCCGUUGUCGcGCGc -3'
miRNA:   3'- uaagCGC--GUAGUUGGGCAACAGU-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.