miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33049 3' -65 NC_007497.1 + 34765 0.66 0.260039
Target:  5'- cGUUCCCuu-GGCC--GCGGCGGCCUc -3'
miRNA:   3'- cCGAGGGccuCCGGgcUGUCGCCGGG- -5'
33049 3' -65 NC_007497.1 + 32592 0.66 0.235836
Target:  5'- cGCUUCuCGGcGGaCUGGCgGGCGGCCUg -3'
miRNA:   3'- cCGAGG-GCCuCCgGGCUG-UCGCCGGG- -5'
33049 3' -65 NC_007497.1 + 35665 0.66 0.235836
Target:  5'- aGCgUUCUGGAGgaauuGCCCGGC-GUGGCCg -3'
miRNA:   3'- cCG-AGGGCCUC-----CGGGCUGuCGCCGGg -5'
33049 3' -65 NC_007497.1 + 23587 0.66 0.230088
Target:  5'- -uCUCCUGGucgcgcugcuGGGCgCGGCGGCgGGCgCCg -3'
miRNA:   3'- ccGAGGGCC----------UCCGgGCUGUCG-CCG-GG- -5'
33049 3' -65 NC_007497.1 + 31301 0.67 0.226697
Target:  5'- cGCUUCCGacGAuGGCUCGACGGCacugcaggucaagggGGCCg -3'
miRNA:   3'- cCGAGGGC--CU-CCGGGCUGUCG---------------CCGGg -5'
33049 3' -65 NC_007497.1 + 18242 0.67 0.224459
Target:  5'- uGGCUa-CGGuuGCCCGAggaagacaAGCGGCCg -3'
miRNA:   3'- -CCGAggGCCucCGGGCUg-------UCGCCGGg -5'
33049 3' -65 NC_007497.1 + 13749 0.69 0.153274
Target:  5'- cGGCgUCCCGuGcGGCCCcuGCGGCGuCCCc -3'
miRNA:   3'- -CCG-AGGGC-CuCCGGGc-UGUCGCcGGG- -5'
33049 3' -65 NC_007497.1 + 13815 0.69 0.153274
Target:  5'- cGGCgUCCCGuGcGGCCCcuGCGGCGuCCCc -3'
miRNA:   3'- -CCG-AGGGC-CuCCGGGc-UGUCGCcGGG- -5'
33049 3' -65 NC_007497.1 + 13782 0.69 0.14934
Target:  5'- cGGCgUCCCcuGcGGCCCGuGCGGCGaCCCa -3'
miRNA:   3'- -CCG-AGGGc-CuCCGGGC-UGUCGCcGGG- -5'
33049 3' -65 NC_007497.1 + 13949 0.7 0.138084
Target:  5'- cGGCgUCCCcugcGGcGGCCCaugcGGCGuccguGCGGCCCa -3'
miRNA:   3'- -CCG-AGGG----CCuCCGGG----CUGU-----CGCCGGG- -5'
33049 3' -65 NC_007497.1 + 38436 0.7 0.131018
Target:  5'- aGGUUCCgGGAGGacaUCGACAGCGagauGCgCa -3'
miRNA:   3'- -CCGAGGgCCUCCg--GGCUGUCGC----CGgG- -5'
33049 3' -65 NC_007497.1 + 30391 0.7 0.124287
Target:  5'- cGGUgaauuUCCCGGAcGGgaaUCCGACcGCGGaCCCg -3'
miRNA:   3'- -CCG-----AGGGCCU-CC---GGGCUGuCGCC-GGG- -5'
33049 3' -65 NC_007497.1 + 13848 0.71 0.11479
Target:  5'- cGGCgUCCCGuGcGGCCCcuGCGGCGaCCCa -3'
miRNA:   3'- -CCG-AGGGC-CuCCGGGc-UGUCGCcGGG- -5'
33049 3' -65 NC_007497.1 + 14455 0.71 0.10318
Target:  5'- cGGCauUCCCGGccacauGGGCCaaCGACAGCGaCCUg -3'
miRNA:   3'- -CCG--AGGGCC------UCCGG--GCUGUCGCcGGG- -5'
33049 3' -65 NC_007497.1 + 16295 0.73 0.078389
Target:  5'- gGGCgCCCGcGAacgaagcacacaGCCuCGGCGGCGGCCCa -3'
miRNA:   3'- -CCGaGGGC-CUc-----------CGG-GCUGUCGCCGGG- -5'
33049 3' -65 NC_007497.1 + 19333 0.73 0.076706
Target:  5'- cGGCUaCCgauggagauCGGGGGCgCCGACA-CGGCCUg -3'
miRNA:   3'- -CCGA-GG---------GCCUCCG-GGCUGUcGCCGGG- -5'
33049 3' -65 NC_007497.1 + 23013 0.77 0.037558
Target:  5'- uGGCcgCaugCGGGGGCggcgaCGACAGCGGCCCu -3'
miRNA:   3'- -CCGa-Gg--GCCUCCGg----GCUGUCGCCGGG- -5'
33049 3' -65 NC_007497.1 + 13881 0.79 0.025445
Target:  5'- cGGCgUCCCGuGcGGCCCauGCGGCGGCCCc -3'
miRNA:   3'- -CCG-AGGGC-CuCCGGGc-UGUCGCCGGG- -5'
33049 3' -65 NC_007497.1 + 13716 0.8 0.02213
Target:  5'- cGGCgUCCCcuGcGGCCCGuGCGGCGGCCCa -3'
miRNA:   3'- -CCG-AGGGc-CuCCGGGC-UGUCGCCGGG- -5'
33049 3' -65 NC_007497.1 + 16659 1.13 5.3e-05
Target:  5'- cGGCUCCCGGAGGCCCGACAGCGGCCCa -3'
miRNA:   3'- -CCGAGGGCCUCCGGGCUGUCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.