Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33050 | 5' | -52.4 | NC_007497.1 | + | 16912 | 1.1 | 0.00108 |
Target: 5'- gGGUGCACGCAGAUAGCGGCUGAAAGUg -3' miRNA: 3'- -CCACGUGCGUCUAUCGCCGACUUUCA- -5' |
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33050 | 5' | -52.4 | NC_007497.1 | + | 36495 | 0.73 | 0.371585 |
Target: 5'- --cGCGCGCAGAUGuCGGCUGccGAGUu -3' miRNA: 3'- ccaCGUGCGUCUAUcGCCGACu-UUCA- -5' |
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33050 | 5' | -52.4 | NC_007497.1 | + | 26843 | 0.7 | 0.535136 |
Target: 5'- --gGCGCGCAGAUucagcAGCGGCcggUGAcGGUc -3' miRNA: 3'- ccaCGUGCGUCUA-----UCGCCG---ACUuUCA- -5' |
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33050 | 5' | -52.4 | NC_007497.1 | + | 28624 | 0.68 | 0.660519 |
Target: 5'- gGGUGgAgGCGGcggcGGCGGCggugGAGAGUc -3' miRNA: 3'- -CCACgUgCGUCua--UCGCCGa---CUUUCA- -5' |
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33050 | 5' | -52.4 | NC_007497.1 | + | 10154 | 0.68 | 0.694725 |
Target: 5'- --cGCGCGCAGAUGGCuugGGC--AAAGg -3' miRNA: 3'- ccaCGUGCGUCUAUCG---CCGacUUUCa -5' |
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33050 | 5' | -52.4 | NC_007497.1 | + | 26653 | 0.67 | 0.739348 |
Target: 5'- gGGUcGCuguuGCGCAGAcgGGCGGuCUGcAGGUu -3' miRNA: 3'- -CCA-CG----UGCGUCUa-UCGCC-GACuUUCA- -5' |
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33050 | 5' | -52.4 | NC_007497.1 | + | 3545 | 0.66 | 0.780004 |
Target: 5'- cGGUGCGCuuuguggccgugaagGCGGccgcggugagggacgGUGGCGGCUGGcaaacgGAGg -3' miRNA: 3'- -CCACGUG---------------CGUC---------------UAUCGCCGACU------UUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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