miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 3' -52.1 NC_007497.1 + 775 0.66 0.819439
Target:  5'- gCGC-UCGAuugcaGCccauGCGGCAUCGAUcacGCCg -3'
miRNA:   3'- -GUGuAGCU-----UGc---CGCCGUAGCUAa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 4227 0.66 0.809795
Target:  5'- nCGCAgcUCGG--GGCGGCAugaccgUCGAcgagUGCCg -3'
miRNA:   3'- -GUGU--AGCUugCCGCCGU------AGCUa---ACGG- -5'
33051 3' -52.1 NC_007497.1 + 21750 0.66 0.809795
Target:  5'- aGCgAUC-AGCGGCGGCGUCGucaauagggGCg -3'
miRNA:   3'- gUG-UAGcUUGCCGCCGUAGCuaa------CGg -5'
33051 3' -52.1 NC_007497.1 + 33857 0.67 0.789922
Target:  5'- aCGCAgcCGAggcGCGGCaGGCcggGUUGAUUGCg -3'
miRNA:   3'- -GUGUa-GCU---UGCCG-CCG---UAGCUAACGg -5'
33051 3' -52.1 NC_007497.1 + 41024 0.67 0.789922
Target:  5'- aACggUGAACGugauggggcuuGCGGCGUCGGcaGCCu -3'
miRNA:   3'- gUGuaGCUUGC-----------CGCCGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 4168 0.67 0.789922
Target:  5'- cCGCccCGAGCuGCGGCAacggaCGAUUcGCCg -3'
miRNA:   3'- -GUGuaGCUUGcCGCCGUa----GCUAA-CGG- -5'
33051 3' -52.1 NC_007497.1 + 33256 0.67 0.779717
Target:  5'- gGCGUCGAuuCGcGCGGCcuaCGAUcgcGCCg -3'
miRNA:   3'- gUGUAGCUu-GC-CGCCGua-GCUAa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 39282 0.67 0.757771
Target:  5'- gCGCGUCG-GCGGCGGCcugcugaAUCcGgaGCCg -3'
miRNA:   3'- -GUGUAGCuUGCCGCCG-------UAGcUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 36169 0.68 0.741719
Target:  5'- gGCGUCGAcggcCGGCGGCuauuucaacgCGGUgcgugaugguggucgUGCCg -3'
miRNA:   3'- gUGUAGCUu---GCCGCCGua--------GCUA---------------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 14945 0.68 0.726497
Target:  5'- gGCAUCagcguCGGCGGCGaCGAUUucgagauuucgGCCa -3'
miRNA:   3'- gUGUAGcuu--GCCGCCGUaGCUAA-----------CGG- -5'
33051 3' -52.1 NC_007497.1 + 16735 0.68 0.719911
Target:  5'- uCACG-CGAGCGGCGcgcucccggcguagcGCAUgCGcgaGUUGCCa -3'
miRNA:   3'- -GUGUaGCUUGCCGC---------------CGUA-GC---UAACGG- -5'
33051 3' -52.1 NC_007497.1 + 32580 0.68 0.70442
Target:  5'- gACuggCGGGCGGCcugucggauGGCGUCGcg-GCCg -3'
miRNA:   3'- gUGua-GCUUGCCG---------CCGUAGCuaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 27191 0.68 0.70442
Target:  5'- gCGCAaggCgGGGCGGC-GCAUCGGcgGCCg -3'
miRNA:   3'- -GUGUa--G-CUUGCCGcCGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 43601 0.68 0.70442
Target:  5'- aCACAcCGGcCGGCGGCucGUCGcuuugcGUUGUCa -3'
miRNA:   3'- -GUGUaGCUuGCCGCCG--UAGC------UAACGG- -5'
33051 3' -52.1 NC_007497.1 + 16160 0.69 0.693262
Target:  5'- uCACGacCGAACGGCGG-AUUGA--GCCa -3'
miRNA:   3'- -GUGUa-GCUUGCCGCCgUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 30944 0.69 0.693262
Target:  5'- gGCGUCGAuuguUGGCgGGCAguuugcggggaUCGAcgGCCu -3'
miRNA:   3'- gUGUAGCUu---GCCG-CCGU-----------AGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 9703 0.69 0.692143
Target:  5'- gACGUCGcggcCGGCGcgccgggugugaaGCAUCGAUacuauUGCCg -3'
miRNA:   3'- gUGUAGCuu--GCCGC-------------CGUAGCUA-----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 27609 0.69 0.679791
Target:  5'- aCAUcgCGAGCGuguuccGCGGCAUCGccuacuggggGCCg -3'
miRNA:   3'- -GUGuaGCUUGC------CGCCGUAGCuaa-------CGG- -5'
33051 3' -52.1 NC_007497.1 + 13086 0.69 0.67077
Target:  5'- aGCGcgGGGCGGUGGUauucauGUCGGUUGUCa -3'
miRNA:   3'- gUGUagCUUGCCGCCG------UAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 13347 0.69 0.663988
Target:  5'- gCGCAUCGAGCGuGaCGGUAaagcgcggaguauuuUCcAUUGCCu -3'
miRNA:   3'- -GUGUAGCUUGC-C-GCCGU---------------AGcUAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.