miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33053 5' -53.7 NC_007497.1 + 1043 0.7 0.508724
Target:  5'- uGCG-UCGGcCGCGuacUGCUCGGGCUUCa -3'
miRNA:   3'- -CGCgAGCCcGUGU---ACGAGCUUGAAGg -5'
33053 5' -53.7 NC_007497.1 + 1714 0.68 0.652669
Target:  5'- aGCGCUCGGGCAguUuCUcgCGAGCg--- -3'
miRNA:   3'- -CGCGAGCCCGUguAcGA--GCUUGaagg -5'
33053 5' -53.7 NC_007497.1 + 3142 0.69 0.585341
Target:  5'- cGCGCUCGgacGGCGCcgGCcagCGcGCUUUUg -3'
miRNA:   3'- -CGCGAGC---CCGUGuaCGa--GCuUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 3387 0.7 0.541135
Target:  5'- uGCGCgCGGGCgAUAUGCcuugCGcGGCUUCUu -3'
miRNA:   3'- -CGCGaGCCCG-UGUACGa---GC-UUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 6321 0.66 0.726864
Target:  5'- gGCGCcacggcucggcaugUCGGGCGCgAUGCUgCGAAacaaggucaaUCCg -3'
miRNA:   3'- -CGCG--------------AGCCCGUG-UACGA-GCUUga--------AGG- -5'
33053 5' -53.7 NC_007497.1 + 8623 0.66 0.729029
Target:  5'- cGCGCUCGGuaagaagccauucGCACGUcacGC-CGAACgggauagCCa -3'
miRNA:   3'- -CGCGAGCC-------------CGUGUA---CGaGCUUGaa-----GG- -5'
33053 5' -53.7 NC_007497.1 + 10716 0.67 0.708314
Target:  5'- cGCGaucauuuUCGGGaGCAUGCUUGcAGCUUgCg -3'
miRNA:   3'- -CGCg------AGCCCgUGUACGAGC-UUGAAgG- -5'
33053 5' -53.7 NC_007497.1 + 12226 0.71 0.455652
Target:  5'- aGCGCcaUCGGGCGCGaccaugaUGCUCagggcaGAGCUaggCCg -3'
miRNA:   3'- -CGCG--AGCCCGUGU-------ACGAG------CUUGAa--GG- -5'
33053 5' -53.7 NC_007497.1 + 13614 0.67 0.675066
Target:  5'- uGCGCUgGucuuGCAUcagGUGUUCGAcCUUCCg -3'
miRNA:   3'- -CGCGAgCc---CGUG---UACGAGCUuGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 14774 0.68 0.630193
Target:  5'- -aGCUCGGGCAUggugGUGauCUCGuucauGCUUCa -3'
miRNA:   3'- cgCGAGCCCGUG----UAC--GAGCu----UGAAGg -5'
33053 5' -53.7 NC_007497.1 + 16723 0.69 0.574207
Target:  5'- cGCGCUccCGGcguaGCGCAUGCgCGAGuugccacgcuuCUUCCg -3'
miRNA:   3'- -CGCGA--GCC----CGUGUACGaGCUU-----------GAAGG- -5'
33053 5' -53.7 NC_007497.1 + 17236 0.67 0.719257
Target:  5'- aCGCUCGGGC-CggGCUgaCGGACg--- -3'
miRNA:   3'- cGCGAGCCCGuGuaCGA--GCUUGaagg -5'
33053 5' -53.7 NC_007497.1 + 17955 0.72 0.411406
Target:  5'- gGUGCgggcggCGGGCAacaacuuccagucgcCAUcCUCGGGCUUCCg -3'
miRNA:   3'- -CGCGa-----GCCCGU---------------GUAcGAGCUUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 20166 0.67 0.697293
Target:  5'- uCGUUCGGGU---UGC-CGAGCgugUCCg -3'
miRNA:   3'- cGCGAGCCCGuguACGaGCUUGa--AGG- -5'
33053 5' -53.7 NC_007497.1 + 20776 0.66 0.751496
Target:  5'- uGUGCcCGaGCGCGUGCUCGcGgUUCg -3'
miRNA:   3'- -CGCGaGCcCGUGUACGAGCuUgAAGg -5'
33053 5' -53.7 NC_007497.1 + 20833 1.14 0.000557
Target:  5'- cGCGCUCGGGCACAUGCUCGAACUUCCc -3'
miRNA:   3'- -CGCGAGCCCGUGUACGAGCUUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 23392 0.67 0.697293
Target:  5'- cGCGCUCGcGGaUGCuuuugcUGCUCGuGCUgCCg -3'
miRNA:   3'- -CGCGAGC-CC-GUGu-----ACGAGCuUGAaGG- -5'
33053 5' -53.7 NC_007497.1 + 23578 0.68 0.607723
Target:  5'- cGCGCUgcUGGGCGCG-GCggCGGGCg-CCg -3'
miRNA:   3'- -CGCGA--GCCCGUGUaCGa-GCUUGaaGG- -5'
33053 5' -53.7 NC_007497.1 + 23825 0.68 0.618952
Target:  5'- -aGCaCGGGCuccGCGUGCUCGAucagacguuGCU-CCa -3'
miRNA:   3'- cgCGaGCCCG---UGUACGAGCU---------UGAaGG- -5'
33053 5' -53.7 NC_007497.1 + 26304 0.77 0.216405
Target:  5'- uGCGgUCGGGCAgGUGUUCu-ACUUCUg -3'
miRNA:   3'- -CGCgAGCCCGUgUACGAGcuUGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.