miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33053 5' -53.7 NC_007497.1 + 34665 0.69 0.574207
Target:  5'- cGCGCUCGcGCGCcUGCgucgCGAucgcuACUUCg -3'
miRNA:   3'- -CGCGAGCcCGUGuACGa---GCU-----UGAAGg -5'
33053 5' -53.7 NC_007497.1 + 3387 0.7 0.541135
Target:  5'- uGCGCgCGGGCgAUAUGCcuugCGcGGCUUCUu -3'
miRNA:   3'- -CGCGaGCCCG-UGUACGa---GC-UUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 1043 0.7 0.508724
Target:  5'- uGCG-UCGGcCGCGuacUGCUCGGGCUUCa -3'
miRNA:   3'- -CGCgAGCCcGUGU---ACGAGCUUGAAGg -5'
33053 5' -53.7 NC_007497.1 + 29771 0.7 0.508724
Target:  5'- cGCGUagucuUCGGGCGCGaGCgCGAACUggUCg -3'
miRNA:   3'- -CGCG-----AGCCCGUGUaCGaGCUUGAa-GG- -5'
33053 5' -53.7 NC_007497.1 + 12226 0.71 0.455652
Target:  5'- aGCGCcaUCGGGCGCGaccaugaUGCUCagggcaGAGCUaggCCg -3'
miRNA:   3'- -CGCG--AGCCCGUGU-------ACGAG------CUUGAa--GG- -5'
33053 5' -53.7 NC_007497.1 + 17955 0.72 0.411406
Target:  5'- gGUGCgggcggCGGGCAacaacuuccagucgcCAUcCUCGGGCUUCCg -3'
miRNA:   3'- -CGCGa-----GCCCGU---------------GUAcGAGCUUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 29139 0.72 0.388923
Target:  5'- cCGUgCGGGCACugucgguauUGCUgcCGGGCUUCCg -3'
miRNA:   3'- cGCGaGCCCGUGu--------ACGA--GCUUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 29674 0.73 0.359355
Target:  5'- cGCGCUCGcauacgguacgaucGGC-CAUGCUCG-GCUgcgCCg -3'
miRNA:   3'- -CGCGAGC--------------CCGuGUACGAGCuUGAa--GG- -5'
33053 5' -53.7 NC_007497.1 + 34898 0.74 0.312084
Target:  5'- cGCGCa-GGGCGa--GCUCGAGCgUCCg -3'
miRNA:   3'- -CGCGagCCCGUguaCGAGCUUGaAGG- -5'
33053 5' -53.7 NC_007497.1 + 29187 0.74 0.304294
Target:  5'- cGCGuUUCGGGCGCGUGCaUCGGcugGCUguUUCg -3'
miRNA:   3'- -CGC-GAGCCCGUGUACG-AGCU---UGA--AGG- -5'
33053 5' -53.7 NC_007497.1 + 43182 0.74 0.296654
Target:  5'- aCGCUUGGGCGCAcccguccgUGCUgGAGCg-CCg -3'
miRNA:   3'- cGCGAGCCCGUGU--------ACGAgCUUGaaGG- -5'
33053 5' -53.7 NC_007497.1 + 26304 0.77 0.216405
Target:  5'- uGCGgUCGGGCAgGUGUUCu-ACUUCUg -3'
miRNA:   3'- -CGCgAGCCCGUgUACGAGcuUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 20833 1.14 0.000557
Target:  5'- cGCGCUCGGGCACAUGCUCGAACUUCCc -3'
miRNA:   3'- -CGCGAGCCCGUGUACGAGCUUGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.