miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33055 5' -61.6 NC_007497.1 + 27180 0.67 0.28893
Target:  5'- gGCGGCGcaucGGC--GGCCGUauccgcuccgcugCCGGCGCGg -3'
miRNA:   3'- -UGUCGC----UCGacUCGGCA-------------GGCCGCGCg -5'
33055 5' -61.6 NC_007497.1 + 14592 0.67 0.28541
Target:  5'- gGCAGCGGgaugcuGCUGAacggagggcagaccuGaCCGUUCGGUGCGa -3'
miRNA:   3'- -UGUCGCU------CGACU---------------C-GGCAGGCCGCGCg -5'
33055 5' -61.6 NC_007497.1 + 26663 0.67 0.282617
Target:  5'- aACGGCGA-CUGGGUCG-CUGuuGCGCa -3'
miRNA:   3'- -UGUCGCUcGACUCGGCaGGCcgCGCG- -5'
33055 5' -61.6 NC_007497.1 + 34645 0.67 0.275731
Target:  5'- cGCGGUG-GCgcc-UCGUUCGGCGCGCu -3'
miRNA:   3'- -UGUCGCuCGacucGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 2614 0.68 0.26898
Target:  5'- --uGCGccGC--GGCCG-CCGGCGCGCa -3'
miRNA:   3'- uguCGCu-CGacUCGGCaGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 4124 0.68 0.26898
Target:  5'- cGCGGCGGuacGC-GAGCgGUUCGGgGaCGCg -3'
miRNA:   3'- -UGUCGCU---CGaCUCGgCAGGCCgC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 28271 0.68 0.262363
Target:  5'- uGCAGaaGAGUgacccGUCGUCCGGCGUGUu -3'
miRNA:   3'- -UGUCg-CUCGacu--CGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15193 0.68 0.237212
Target:  5'- cGCuGCGGuGUUGAGCUucggGUagCGGCGCGCc -3'
miRNA:   3'- -UGuCGCU-CGACUCGG----CAg-GCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 39275 0.68 0.237212
Target:  5'- gGCGGCGGccuGCUGAauCCGgagCCGauGCGCGCg -3'
miRNA:   3'- -UGUCGCU---CGACUc-GGCa--GGC--CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 475 0.69 0.208648
Target:  5'- -uGGCGcGCUggcaaGAGCagcaGUgCGGCGCGCg -3'
miRNA:   3'- ugUCGCuCGA-----CUCGg---CAgGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 35138 0.69 0.203304
Target:  5'- cGCGGCGcaGGCcGAGCUugCCGGCauGCGCg -3'
miRNA:   3'- -UGUCGC--UCGaCUCGGcaGGCCG--CGCG- -5'
33055 5' -61.6 NC_007497.1 + 28098 0.69 0.203303
Target:  5'- uACAGCGAcGUcGucuuGCCGUCaaaGGCGcCGCg -3'
miRNA:   3'- -UGUCGCU-CGaCu---CGGCAGg--CCGC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 9713 0.69 0.198078
Target:  5'- uCAGCcAGCcGAcGUCGcggCCGGCGCGCc -3'
miRNA:   3'- uGUCGcUCGaCU-CGGCa--GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 23880 0.7 0.192971
Target:  5'- cCGGCGuGaaGcGCUGgCCGGCGCGCa -3'
miRNA:   3'- uGUCGCuCgaCuCGGCaGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 16853 0.7 0.192971
Target:  5'- cGCugauGCGGGCUGcucGuCCG-CCGGCGCGg -3'
miRNA:   3'- -UGu---CGCUCGACu--C-GGCaGGCCGCGCg -5'
33055 5' -61.6 NC_007497.1 + 27092 0.7 0.187979
Target:  5'- cACGGCGAuCcu-GCCGUCgGGCGuCGCa -3'
miRNA:   3'- -UGUCGCUcGacuCGGCAGgCCGC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 27238 0.7 0.183101
Target:  5'- gACGGCGuGCUG-GUCgGUCCGGgGCa- -3'
miRNA:   3'- -UGUCGCuCGACuCGG-CAGGCCgCGcg -5'
33055 5' -61.6 NC_007497.1 + 23779 0.7 0.172305
Target:  5'- gGCcGCGAGCUGGuaCGUguggcccuucaggcUCGGCGUGCa -3'
miRNA:   3'- -UGuCGCUCGACUcgGCA--------------GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 34608 0.71 0.164695
Target:  5'- cACGGUGGGCUcaGGGCUGUugucgguggUCGGCGgGCu -3'
miRNA:   3'- -UGUCGCUCGA--CUCGGCA---------GGCCGCgCG- -5'
33055 5' -61.6 NC_007497.1 + 7166 0.71 0.164256
Target:  5'- -uGGCGGGCUgGAGCCGagcaacgcgaagaUCaGGUGCGCc -3'
miRNA:   3'- ugUCGCUCGA-CUCGGC-------------AGgCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.