Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 40176 | 0.66 | 0.912573 |
|
Target: 5'- gGCCUCG----UCGACGGCAgccUGCa-- -3' miRNA: 3'- -CGGAGCauacAGCUGUCGUa--ACGacu -5' |
|||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 32335 | 0.66 | 0.905698 |
|
Target: 5'- gGgCUUGU-UGgCGGCAGCggUGCUGGu -3' miRNA: 3'- -CgGAGCAuACaGCUGUCGuaACGACU- -5' |
|||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 29094 | 0.66 | 0.89852 |
|
Target: 5'- gGCCUCGgcUGUCGACgaaacAGCca-GCcGAu -3' miRNA: 3'- -CGGAGCauACAGCUG-----UCGuaaCGaCU- -5' |
|||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 35683 | 0.67 | 0.874403 |
|
Target: 5'- aGCCgCGcUGUGUCggccgauacgccgGACAGCGccaccgccUUGCUGAu -3' miRNA: 3'- -CGGaGC-AUACAG-------------CUGUCGU--------AACGACU- -5' |
|||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 1237 | 0.7 | 0.703914 |
|
Target: 5'- gGCCUCGUcgggGUCGAUGGU---GCUGGg -3' miRNA: 3'- -CGGAGCAua--CAGCUGUCGuaaCGACU- -5' |
|||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 33830 | 0.73 | 0.509222 |
|
Target: 5'- cGCCUCGUAU-UCcGC-GCGUUGCUGGg -3' miRNA: 3'- -CGGAGCAUAcAGcUGuCGUAACGACU- -5' |
|||||||
| 33058 | 5' | -50.2 | NC_007497.1 | + | 22344 | 1.12 | 0.001662 |
|
Target: 5'- gGCCUCGUAUGUCGACAGCAUUGCUGAu -3' miRNA: 3'- -CGGAGCAUACAGCUGUCGUAACGACU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home