Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33059 | 3' | -61.9 | NC_007497.1 | + | 23206 | 1.1 | 0.000149 |
Target: 5'- cGCUGACCGUGCCCGCAUCGCCGGCCAg -3' miRNA: 3'- -CGACUGGCACGGGCGUAGCGGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 26016 | 0.72 | 0.126107 |
Target: 5'- uGgUGG-CGUcGCCCGCguacucuuccgcGUCGCCGGCCAu -3' miRNA: 3'- -CgACUgGCA-CGGGCG------------UAGCGGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 39394 | 0.7 | 0.164978 |
Target: 5'- ---aACCGgauaGCCCGCcagcGUCGCCGGCUg -3' miRNA: 3'- cgacUGGCa---CGGGCG----UAGCGGCCGGu -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 23891 | 0.7 | 0.164978 |
Target: 5'- cGCUGGCCG-GCgCGCAcguccuucgugUCGCCauugcaGGCCGu -3' miRNA: 3'- -CGACUGGCaCGgGCGU-----------AGCGG------CCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 867 | 0.7 | 0.173947 |
Target: 5'- uGCUGACCGUGUUcacgugCGCGUCGCaauccucuGCCAc -3' miRNA: 3'- -CGACUGGCACGG------GCGUAGCGgc------CGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 23634 | 0.7 | 0.183347 |
Target: 5'- cGCcGGCCGUGaCCCacuGCG--GCCGGCCGu -3' miRNA: 3'- -CGaCUGGCAC-GGG---CGUagCGGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 44673 | 0.69 | 0.198289 |
Target: 5'- gGCUGuagccuGCCGcgaUGgCCGCGUCcuuauuggacuuGCCGGCCAa -3' miRNA: 3'- -CGAC------UGGC---ACgGGCGUAG------------CGGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 14288 | 0.68 | 0.230781 |
Target: 5'- aGCUGGCgCaUGCaCUGCGUCGCCagcgagcGGCCc -3' miRNA: 3'- -CGACUG-GcACG-GGCGUAGCGG-------CCGGu -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 2257 | 0.68 | 0.262384 |
Target: 5'- uGCUauuuGCgCGUGCCCgGUGUCuGCCGGCUg -3' miRNA: 3'- -CGAc---UG-GCACGGG-CGUAG-CGGCCGGu -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 36385 | 0.67 | 0.296697 |
Target: 5'- cGCUGAUCG-GCgacuCCGCGUCaaacGCCuGCCAc -3' miRNA: 3'- -CGACUGGCaCG----GGCGUAG----CGGcCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 42380 | 0.67 | 0.303964 |
Target: 5'- cGC-GAcCCGUGCCaccauucaGC-UCGCCGcGCCGg -3' miRNA: 3'- -CGaCU-GGCACGGg-------CGuAGCGGC-CGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 14444 | 0.66 | 0.311368 |
Target: 5'- --cGACgGcgGCCCgGCAUUcCCGGCCAc -3' miRNA: 3'- cgaCUGgCa-CGGG-CGUAGcGGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 4299 | 0.66 | 0.324266 |
Target: 5'- gGCUGGCUuuuGUGCCCGguccgauuguucugCGCCucGGCCAu -3' miRNA: 3'- -CGACUGG---CACGGGCgua-----------GCGG--CCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 15238 | 0.66 | 0.326583 |
Target: 5'- cGCgc-CUGUGgcgcauCCCGCGgaCGCCGGCCGa -3' miRNA: 3'- -CGacuGGCAC------GGGCGUa-GCGGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 3943 | 0.66 | 0.341542 |
Target: 5'- cGUUcuUCGUGCCgGCGUCGacccgcaUCGGCCAa -3' miRNA: 3'- -CGAcuGGCACGGgCGUAGC-------GGCCGGU- -5' |
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33059 | 3' | -61.9 | NC_007497.1 | + | 36190 | 0.66 | 0.348799 |
Target: 5'- --cGACCGgaggaugcguggGCUgGCGUCGaCGGCCGg -3' miRNA: 3'- cgaCUGGCa-----------CGGgCGUAGCgGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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