miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 28627 0.66 0.995532
Target:  5'- aAAGGGUGgAGG-CGGCGGCG-GCGGCg -3'
miRNA:   3'- -UUUCUACgUUUgGUUGUUGCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 34114 0.66 0.995532
Target:  5'- --uGGUGCAGgacgcAUCGGCAAuCGAuACGGCa -3'
miRNA:   3'- uuuCUACGUU-----UGGUUGUU-GCU-UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 33868 0.66 0.995532
Target:  5'- gAAGGggGCGAACgCAGcCGAgGcGCGGCa -3'
miRNA:   3'- -UUUCuaCGUUUG-GUU-GUUgCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 21419 0.66 0.99545
Target:  5'- --cGAUGCucGCUgucuagcGACAGCGAGCugAGCc -3'
miRNA:   3'- uuuCUACGuuUGG-------UUGUUGCUUG--UCG- -5'
33060 3' -44.4 NC_007497.1 + 7362 0.67 0.994664
Target:  5'- gAGGGcgGCGAACUuGCuGCGAGuauCGGCa -3'
miRNA:   3'- -UUUCuaCGUUUGGuUGuUGCUU---GUCG- -5'
33060 3' -44.4 NC_007497.1 + 17243 0.67 0.994664
Target:  5'- -----gGcCGGGCUGACgGACGAGCAGCg -3'
miRNA:   3'- uuucuaC-GUUUGGUUG-UUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 23492 0.67 0.994664
Target:  5'- -cAGGUGCAcgacGCCGGCGcccgccgccGCGcccAGCAGCg -3'
miRNA:   3'- uuUCUACGUu---UGGUUGU---------UGC---UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 31308 0.67 0.993664
Target:  5'- uGGGcgGCGcuuCCGACGAUGGcucgACGGCa -3'
miRNA:   3'- uUUCuaCGUuu-GGUUGUUGCU----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 35691 0.67 0.993664
Target:  5'- ---uGUGUcgGCCGAUAcgcCGGACAGCg -3'
miRNA:   3'- uuucUACGuuUGGUUGUu--GCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 4961 0.67 0.993664
Target:  5'- --cGGUGC-GGCCGuCGGCGGaggcaACAGCa -3'
miRNA:   3'- uuuCUACGuUUGGUuGUUGCU-----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 21032 0.67 0.993664
Target:  5'- -----aGCAGACgAugAGCGAgcGCGGCc -3'
miRNA:   3'- uuucuaCGUUUGgUugUUGCU--UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 464 0.67 0.993556
Target:  5'- cAAGAgcaGCAGugCGGCGcgcgguuacgguuACGAAUGGCa -3'
miRNA:   3'- uUUCUa--CGUUugGUUGU-------------UGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 4015 0.67 0.99252
Target:  5'- --cGAUGCGggUCGACGccggcACGAagaacgucgggACGGCa -3'
miRNA:   3'- uuuCUACGUuuGGUUGU-----UGCU-----------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15874 0.67 0.99252
Target:  5'- --uGAUGCuGAugCAACGaauugaggauGCGAugAGCu -3'
miRNA:   3'- uuuCUACG-UUugGUUGU----------UGCUugUCG- -5'
33060 3' -44.4 NC_007497.1 + 26881 0.67 0.99252
Target:  5'- ----cUGCAcGCUGACGACGcgguACAGCu -3'
miRNA:   3'- uuucuACGUuUGGUUGUUGCu---UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2542 0.67 0.99252
Target:  5'- cGGGcGUGCGcGCCGGCGGCc-GCGGCg -3'
miRNA:   3'- uUUC-UACGUuUGGUUGUUGcuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 12000 0.67 0.99252
Target:  5'- --uGAUGCcguGACgAuuGCcGCGAGCGGCg -3'
miRNA:   3'- uuuCUACGu--UUGgU--UGuUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2620 0.67 0.991216
Target:  5'- cAAGGAUGCGccgcGGCCGcCGGCGcGCAcGCc -3'
miRNA:   3'- -UUUCUACGU----UUGGUuGUUGCuUGU-CG- -5'
33060 3' -44.4 NC_007497.1 + 35202 0.67 0.991216
Target:  5'- aGAAGgcGCGGAgCGAUcGCGAuGCGGCu -3'
miRNA:   3'- -UUUCuaCGUUUgGUUGuUGCU-UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 31095 0.67 0.991077
Target:  5'- --cGGUGCAauuccaucuuuccGACCAACcACGGAaAGCu -3'
miRNA:   3'- uuuCUACGU-------------UUGGUUGuUGCUUgUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.