Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33060 | 5' | -59.9 | NC_007497.1 | + | 23376 | 1.08 | 0.000221 |
Target: 5'- uUUGCUGCUCGUGCUGCCGCUGGCAGCc -3' miRNA: 3'- -AACGACGAGCACGACGGCGACCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 23295 | 0.73 | 0.116657 |
Target: 5'- -cGCUGCUgcagGCUGCCaGC-GGCAGCa -3' miRNA: 3'- aaCGACGAgca-CGACGG-CGaCCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 1126 | 0.73 | 0.116657 |
Target: 5'- cUGCcgUGCUCGUGUggcaagucgUGCUGUucUGGCAGCc -3' miRNA: 3'- aACG--ACGAGCACG---------ACGGCG--ACCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 24074 | 0.7 | 0.172653 |
Target: 5'- -cGUUGUUgGgGCUGCUGC-GGCAGCc -3' miRNA: 3'- aaCGACGAgCaCGACGGCGaCCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 14783 | 0.69 | 0.220349 |
Target: 5'- -gGCuUGCUCGUcGCcGaCUGCUcGGCGGCa -3' miRNA: 3'- aaCG-ACGAGCA-CGaC-GGCGA-CCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 20225 | 0.69 | 0.226292 |
Target: 5'- -cGCUuCUCcgauccgaaGCagGCCGCUGGCAGCa -3' miRNA: 3'- aaCGAcGAGca-------CGa-CGGCGACCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 17310 | 0.68 | 0.236707 |
Target: 5'- -cGCUGCUCGUccgucaGCccggcccgagcgucUGCCuGCgcgGGCGGCu -3' miRNA: 3'- aaCGACGAGCA------CG--------------ACGG-CGa--CCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 33582 | 0.68 | 0.251435 |
Target: 5'- gUUGCacggGCgCGUGCUGCUGCgcugGGUcagaaAGCa -3' miRNA: 3'- -AACGa---CGaGCACGACGGCGa---CCG-----UCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 25474 | 0.68 | 0.254072 |
Target: 5'- -cGCUGCggacggaagcggaaaUCG-GCUGgUGCUGGaCGGCa -3' miRNA: 3'- aaCGACG---------------AGCaCGACgGCGACC-GUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 17585 | 0.68 | 0.25807 |
Target: 5'- aUGCgGCgCGUGCaaguuCCGCgcgGGCGGCg -3' miRNA: 3'- aACGaCGaGCACGac---GGCGa--CCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 4278 | 0.68 | 0.25807 |
Target: 5'- aUGCUcgGCuUCGUGCgcauggcGCCGgaaUUGGCGGCg -3' miRNA: 3'- aACGA--CG-AGCACGa------CGGC---GACCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 26733 | 0.68 | 0.264848 |
Target: 5'- -cGUUGCUCG-GCggUGCCuGUaccgaUGGCGGCa -3' miRNA: 3'- aaCGACGAGCaCG--ACGG-CG-----ACCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 32323 | 0.68 | 0.264848 |
Target: 5'- -gGCaGCg-GUGCUGgUGCUGGCGGg -3' miRNA: 3'- aaCGaCGagCACGACgGCGACCGUCg -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 41600 | 0.68 | 0.271769 |
Target: 5'- -aGCUGUUCGa--UGCCGCUGcccCAGCu -3' miRNA: 3'- aaCGACGAGCacgACGGCGACc--GUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 16843 | 0.67 | 0.278835 |
Target: 5'- -gGCUGCUCGUccGCcGgCGC-GGguGCg -3' miRNA: 3'- aaCGACGAGCA--CGaCgGCGaCCguCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 41586 | 0.67 | 0.286046 |
Target: 5'- -gGCgGCUCGUGCcuuccUGCCggaaaagauGCUGGguCAGCg -3' miRNA: 3'- aaCGaCGAGCACG-----ACGG---------CGACC--GUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 38899 | 0.66 | 0.324307 |
Target: 5'- aUGUUGCUCGac--GCCGCgacacagucGGCGGCg -3' miRNA: 3'- aACGACGAGCacgaCGGCGa--------CCGUCG- -5' |
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33060 | 5' | -59.9 | NC_007497.1 | + | 10101 | 0.66 | 0.357568 |
Target: 5'- --uCUGCgcgCGcagGCUGCCGCUcggaucGCAGCa -3' miRNA: 3'- aacGACGa--GCa--CGACGGCGAc-----CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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