miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33062 5' -57.6 NC_007497.1 + 2523 0.66 0.573584
Target:  5'- cGGUCcugccacuucuGCCCGGGCGugcgcgcCGGCGGCcgCGg -3'
miRNA:   3'- aCCAGc----------UGGGCUUGUu------GCCGCCGa-GC- -5'
33062 5' -57.6 NC_007497.1 + 44363 0.66 0.562848
Target:  5'- cGGUUGAUCgc--CAACGGCGGCa-- -3'
miRNA:   3'- aCCAGCUGGgcuuGUUGCCGCCGagc -5'
33062 5' -57.6 NC_007497.1 + 36799 0.66 0.552166
Target:  5'- cGGaUCGAgCCaGAACGcgcgguccucgaGCaGCGGCUCGc -3'
miRNA:   3'- aCC-AGCUgGG-CUUGU------------UGcCGCCGAGC- -5'
33062 5' -57.6 NC_007497.1 + 3524 0.66 0.541546
Target:  5'- aGG-CGGCCgCGGugagggACggUGGCGGCUgGc -3'
miRNA:   3'- aCCaGCUGG-GCU------UGuuGCCGCCGAgC- -5'
33062 5' -57.6 NC_007497.1 + 350 0.66 0.530995
Target:  5'- gUGGUCG-CCCGcugaagugguGCucGCGuguGCGGCUCGa -3'
miRNA:   3'- -ACCAGCuGGGCu---------UGu-UGC---CGCCGAGC- -5'
33062 5' -57.6 NC_007497.1 + 31169 0.67 0.52052
Target:  5'- -cGUUGuCCgCGAACGucgGGCGGCUCa -3'
miRNA:   3'- acCAGCuGG-GCUUGUug-CCGCCGAGc -5'
33062 5' -57.6 NC_007497.1 + 27249 0.67 0.52052
Target:  5'- aGGUCGGCauGGACGGCGuGCuGgUCGg -3'
miRNA:   3'- aCCAGCUGggCUUGUUGC-CGcCgAGC- -5'
33062 5' -57.6 NC_007497.1 + 36855 0.67 0.52052
Target:  5'- cUGGcUCGAUCCGcuGCGcgagGCGGCgGGCgUCGa -3'
miRNA:   3'- -ACC-AGCUGGGCu-UGU----UGCCG-CCG-AGC- -5'
33062 5' -57.6 NC_007497.1 + 35974 0.67 0.510126
Target:  5'- gUGGaCGaACCUGAGCAAC--CGGCUCa -3'
miRNA:   3'- -ACCaGC-UGGGCUUGUUGccGCCGAGc -5'
33062 5' -57.6 NC_007497.1 + 5361 0.67 0.510126
Target:  5'- cUGGUagacgaCGACCUGAcgcguACGucCGGCGcGCUCGc -3'
miRNA:   3'- -ACCA------GCUGGGCU-----UGUu-GCCGC-CGAGC- -5'
33062 5' -57.6 NC_007497.1 + 35798 0.67 0.503932
Target:  5'- -aGUCGGCCCGcuggucgagacgaucAGCAagGCGGUGGCg-- -3'
miRNA:   3'- acCAGCUGGGC---------------UUGU--UGCCGCCGagc -5'
33062 5' -57.6 NC_007497.1 + 2300 0.67 0.499821
Target:  5'- gGGcCuGCUCGGGCAACGGUGaGCUUu -3'
miRNA:   3'- aCCaGcUGGGCUUGUUGCCGC-CGAGc -5'
33062 5' -57.6 NC_007497.1 + 13695 0.67 0.499821
Target:  5'- cGG-CGGCCCauGCGGCGGCccGCUCu -3'
miRNA:   3'- aCCaGCUGGGcuUGUUGCCGc-CGAGc -5'
33062 5' -57.6 NC_007497.1 + 23583 0.67 0.489608
Target:  5'- cUGGUCGcGCugCUGGGC-GCGGCGGCgggCGc -3'
miRNA:   3'- -ACCAGC-UG--GGCUUGuUGCCGCCGa--GC- -5'
33062 5' -57.6 NC_007497.1 + 30655 0.68 0.459581
Target:  5'- aGGUCGACUgcacAGCGAuCGGCGGCg-- -3'
miRNA:   3'- aCCAGCUGGgc--UUGUU-GCCGCCGagc -5'
33062 5' -57.6 NC_007497.1 + 5832 0.68 0.449791
Target:  5'- -cGUCGGCUgaCGAGCGagcGCGGCGaguuGCUCGa -3'
miRNA:   3'- acCAGCUGG--GCUUGU---UGCCGC----CGAGC- -5'
33062 5' -57.6 NC_007497.1 + 41610 0.68 0.449791
Target:  5'- cUGGuUCGuuUCguggGAGCaAGCGGCGGCUCGu -3'
miRNA:   3'- -ACC-AGCugGG----CUUG-UUGCCGCCGAGC- -5'
33062 5' -57.6 NC_007497.1 + 30089 0.68 0.411822
Target:  5'- cGGuUCGGCgUGAAUAacccgcugccuuACGGCGGCUUu -3'
miRNA:   3'- aCC-AGCUGgGCUUGU------------UGCCGCCGAGc -5'
33062 5' -57.6 NC_007497.1 + 32462 0.69 0.393597
Target:  5'- cGGUCGcaagauggaACCCGuACGcguugccgccgGCGGCGGCcgCGa -3'
miRNA:   3'- aCCAGC---------UGGGCuUGU-----------UGCCGCCGa-GC- -5'
33062 5' -57.6 NC_007497.1 + 17292 0.69 0.36726
Target:  5'- ---cCGGCCCGAGCGucugccugcGCgGGCGGCUgCGg -3'
miRNA:   3'- accaGCUGGGCUUGU---------UG-CCGCCGA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.