miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33063 3' -60.2 NC_007497.1 + 40750 0.67 0.313641
Target:  5'- --gGCGGCgGCCGUcucuuccgagauGCcGGCCcGUUGCg -3'
miRNA:   3'- uuaCGCCGgCGGCA------------CGuCUGG-CAGCG- -5'
33063 3' -60.2 NC_007497.1 + 27584 0.68 0.309084
Target:  5'- --cGuCGGCCGCCGacuggaucacgcaguUGCAGGCgaaUCGCg -3'
miRNA:   3'- uuaC-GCCGGCGGC---------------ACGUCUGgc-AGCG- -5'
33063 3' -60.2 NC_007497.1 + 4593 0.68 0.306074
Target:  5'- cGUGCGGuCCgGUCGUGCGGcACCuacaacagcGUCGUu -3'
miRNA:   3'- uUACGCC-GG-CGGCACGUC-UGG---------CAGCG- -5'
33063 3' -60.2 NC_007497.1 + 31211 0.68 0.298647
Target:  5'- -uUGCGGCCcCCuugaccUGCAGuGCCGUCGa -3'
miRNA:   3'- uuACGCCGGcGGc-----ACGUC-UGGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 37986 0.68 0.296446
Target:  5'- cAUGCGGCCGgCGUucgacgcgucgaucGCucAGGCCGagggCGCa -3'
miRNA:   3'- uUACGCCGGCgGCA--------------CG--UCUGGCa---GCG- -5'
33063 3' -60.2 NC_007497.1 + 34930 0.68 0.29136
Target:  5'- uAUGCGGCCGUgaucgCGcGCgAGACCGcggccgCGCa -3'
miRNA:   3'- uUACGCCGGCG-----GCaCG-UCUGGCa-----GCG- -5'
33063 3' -60.2 NC_007497.1 + 23506 0.69 0.263607
Target:  5'- --gGCGGCCGCCGcuCAGGCCcagGCg -3'
miRNA:   3'- uuaCGCCGGCGGCacGUCUGGcagCG- -5'
33063 3' -60.2 NC_007497.1 + 32552 0.69 0.263607
Target:  5'- --cGCGGCCGCCGccgGCGGcaaCG-CGUa -3'
miRNA:   3'- uuaCGCCGGCGGCa--CGUCug-GCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 34623 0.69 0.250554
Target:  5'- -cUGCGGCCaaGCCG-GCGG-UCGcCGCg -3'
miRNA:   3'- uuACGCCGG--CGGCaCGUCuGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 34758 0.69 0.24423
Target:  5'- --cGCGGCCGCCGaGCGcGAaguagCGaUCGCg -3'
miRNA:   3'- uuaCGCCGGCGGCaCGU-CUg----GC-AGCG- -5'
33063 3' -60.2 NC_007497.1 + 32453 0.69 0.238039
Target:  5'- --cGUGGCCGCCGgucGCAaGAuggaacCCGUaCGCg -3'
miRNA:   3'- uuaCGCCGGCGGCa--CGU-CU------GGCA-GCG- -5'
33063 3' -60.2 NC_007497.1 + 2279 0.69 0.23198
Target:  5'- --gGCGGCCuGCCGUgGCGaGCCGU-GCu -3'
miRNA:   3'- uuaCGCCGG-CGGCA-CGUcUGGCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 19725 0.7 0.220251
Target:  5'- ---uCGGCaUGCCGUGCGGgcaucgggcauaGCCGUCGUc -3'
miRNA:   3'- uuacGCCG-GCGGCACGUC------------UGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 39250 0.7 0.219678
Target:  5'- cGAUGCGcgcgaugaaggucGCCGCCagcgaguaagcGU-CGGGCCGUCGCg -3'
miRNA:   3'- -UUACGC-------------CGGCGG-----------CAcGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 13628 0.7 0.214579
Target:  5'- --aGCgGGCCGCCGcauGGGCCGcCGCa -3'
miRNA:   3'- uuaCG-CCGGCGGCacgUCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 3839 0.7 0.20361
Target:  5'- aAAUGCGGCguCGaCGUGCGGccgauugcCCGUCGCc -3'
miRNA:   3'- -UUACGCCG--GCgGCACGUCu-------GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 4961 0.7 0.196743
Target:  5'- cGGUGCGGCCGUCG-GCGGAggcaacagcaggagUCGUUGg -3'
miRNA:   3'- -UUACGCCGGCGGCaCGUCU--------------GGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 2332 0.71 0.19313
Target:  5'- -uUGaUGGCaCGCCGUGCGaagcgcccGACCGUgGCc -3'
miRNA:   3'- uuAC-GCCG-GCGGCACGU--------CUGGCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 23829 0.71 0.183127
Target:  5'- --cGCGGCCGCCGUGa--GCU-UCGCa -3'
miRNA:   3'- uuaCGCCGGCGGCACgucUGGcAGCG- -5'
33063 3' -60.2 NC_007497.1 + 39792 0.71 0.178298
Target:  5'- --cGCGaCCGaaGUGCAGACCGaguUCGCc -3'
miRNA:   3'- uuaCGCcGGCggCACGUCUGGC---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.