miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33063 5' -56.8 NC_007497.1 + 25461 0.66 0.592676
Target:  5'- -aGCGGAaaucggcuggugCUGGACGGcaguagcguGCGCGUCUa- -3'
miRNA:   3'- uaCGCCUa-----------GACUUGCC---------CGCGCAGAgg -5'
33063 5' -56.8 NC_007497.1 + 32641 0.66 0.540383
Target:  5'- aAUGC-GAUC-GGACuuGGCGCGUCUgCCg -3'
miRNA:   3'- -UACGcCUAGaCUUGc-CCGCGCAGA-GG- -5'
33063 5' -56.8 NC_007497.1 + 32584 0.67 0.528603
Target:  5'- -gGCGGA-CUG-GCGGGCggccugucggaugGCGUCgcggCCg -3'
miRNA:   3'- uaCGCCUaGACuUGCCCG-------------CGCAGa---GG- -5'
33063 5' -56.8 NC_007497.1 + 21110 0.67 0.519035
Target:  5'- uGUGCGGGUacu-GCGGGCGCG-Cg-- -3'
miRNA:   3'- -UACGCCUAgacuUGCCCGCGCaGagg -5'
33063 5' -56.8 NC_007497.1 + 16849 0.67 0.504292
Target:  5'- gAUGCGGG-CUGcucguccgccggcGCGGGUGCGgggCUCUu -3'
miRNA:   3'- -UACGCCUaGACu------------UGCCCGCGCa--GAGG- -5'
33063 5' -56.8 NC_007497.1 + 17586 0.68 0.467262
Target:  5'- aAUGCGGcgCgUGcaaguuccgcGCGGGCGgCGUCUCg -3'
miRNA:   3'- -UACGCCuaG-ACu---------UGCCCGC-GCAGAGg -5'
33063 5' -56.8 NC_007497.1 + 43102 0.68 0.446319
Target:  5'- uUGCGGcgCUccagcacGGACGGGUGCG-C-CCa -3'
miRNA:   3'- uACGCCuaGA-------CUUGCCCGCGCaGaGG- -5'
33063 5' -56.8 NC_007497.1 + 30112 0.69 0.390433
Target:  5'- -aGCGGAUC--AGCGGGUGCGaacgCCg -3'
miRNA:   3'- uaCGCCUAGacUUGCCCGCGCaga-GG- -5'
33063 5' -56.8 NC_007497.1 + 16066 0.69 0.390433
Target:  5'- gAUGCGcGAaugGcGCGGGCGCGUCUg- -3'
miRNA:   3'- -UACGC-CUagaCuUGCCCGCGCAGAgg -5'
33063 5' -56.8 NC_007497.1 + 8699 0.72 0.256807
Target:  5'- -aGCGGAagcGGGCgGGGCGCGUCggCCg -3'
miRNA:   3'- uaCGCCUagaCUUG-CCCGCGCAGa-GG- -5'
33063 5' -56.8 NC_007497.1 + 25824 1.1 0.000446
Target:  5'- uAUGCGGAUCUGAACGGGCGCGUCUCCg -3'
miRNA:   3'- -UACGCCUAGACUUGCCCGCGCAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.