Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33064 | 3' | -55.6 | NC_007497.1 | + | 1745 | 0.66 | 0.585341 |
Target: 5'- cGCGAUGUgUGUCCGgUGCcGuUCCGGGa -3' miRNA: 3'- -CGUUGCG-ACAGGCgACGaC-AGGUCUg -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 15323 | 0.66 | 0.641435 |
Target: 5'- cGCGGCGCUcggccggcGUCCGCgggaUGCgccaCAGGCg -3' miRNA: 3'- -CGUUGCGA--------CAGGCG----ACGacagGUCUG- -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 15893 | 0.67 | 0.515144 |
Target: 5'- gGCAGCGUUGgguagcaugaaggCCGCUGCgcUgCAGACc -3' miRNA: 3'- -CGUUGCGACa------------GGCGACGacAgGUCUG- -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 25959 | 1.12 | 0.00041 |
Target: 5'- cGCAACGCUGUCCGCUGCUGUCCAGACu -3' miRNA: 3'- -CGUUGCGACAGGCGACGACAGGUCUG- -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 33110 | 0.66 | 0.641435 |
Target: 5'- cGCGAgaGCUGgCCGC-GCUGUCgauGGGCg -3' miRNA: 3'- -CGUUg-CGACaGGCGaCGACAGg--UCUG- -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 34792 | 0.7 | 0.388923 |
Target: 5'- cGCGACGCg--UCGCUGCUGcgCCAacgccagcGACg -3' miRNA: 3'- -CGUUGCGacaGGCGACGACa-GGU--------CUG- -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 35228 | 0.66 | 0.606602 |
Target: 5'- -aAGCGCUGcCgCGCUGgUGUCUcuugagaAGGCg -3' miRNA: 3'- cgUUGCGACaG-GCGACgACAGG-------UCUG- -5' |
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33064 | 3' | -55.6 | NC_007497.1 | + | 43915 | 0.69 | 0.446595 |
Target: 5'- uGCAGaGCUGUCCgaGCUGUuucaUGUCCAaGAUc -3' miRNA: 3'- -CGUUgCGACAGG--CGACG----ACAGGU-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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