Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33064 | 5' | -59 | NC_007497.1 | + | 25925 | 1.08 | 0.000359 |
Target: 5'- aAGGCGCGUGUCGACGCUGACAGCGCAa -3' miRNA: 3'- -UCCGCGCACAGCUGCGACUGUCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 34066 | 0.72 | 0.188645 |
Target: 5'- gGGGCGCG---CGcACGCUGGCAGCGa- -3' miRNA: 3'- -UCCGCGCacaGC-UGCGACUGUCGCgu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 17582 | 0.72 | 0.198978 |
Target: 5'- cGGCGCGUGcaaguUCcGCGCgGGCGGCGUc -3' miRNA: 3'- uCCGCGCAC-----AGcUGCGaCUGUCGCGu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 15787 | 0.71 | 0.226983 |
Target: 5'- uGGGCGCc-GUCGcACGUUGaacaggucuGCAGCGCAg -3' miRNA: 3'- -UCCGCGcaCAGC-UGCGAC---------UGUCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 35686 | 0.71 | 0.226983 |
Target: 5'- -cGCGCuGUGUCGgccgauACGCcgGACAGCGCc -3' miRNA: 3'- ucCGCG-CACAGC------UGCGa-CUGUCGCGu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 2957 | 0.7 | 0.271719 |
Target: 5'- cGGCGCGUGUgGACGgC-GACGGUccgauuaaGCAg -3' miRNA: 3'- uCCGCGCACAgCUGC-GaCUGUCG--------CGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 22811 | 0.69 | 0.300326 |
Target: 5'- aAGGCGCGUGg---UGCUGACAuCGCu -3' miRNA: 3'- -UCCGCGCACagcuGCGACUGUcGCGu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 33576 | 0.68 | 0.31548 |
Target: 5'- cGGGCGCGUGcugCuGCGCUGGguCAGaaaGCAu -3' miRNA: 3'- -UCCGCGCACa--GcUGCGACU--GUCg--CGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 30817 | 0.68 | 0.326427 |
Target: 5'- cGGCuGCGaacgugaaugucccaUGUUGGggccaGCUGACAGCGCGu -3' miRNA: 3'- uCCG-CGC---------------ACAGCUg----CGACUGUCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 16960 | 0.68 | 0.331205 |
Target: 5'- cGGGCGgGU-UCGAauCGCUGAaaGGCGCAu -3' miRNA: 3'- -UCCGCgCAcAGCU--GCGACUg-UCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 23388 | 0.68 | 0.331205 |
Target: 5'- uGGGcCGCG-GUgCGGCGUUGuucuuCGGCGCGc -3' miRNA: 3'- -UCC-GCGCaCA-GCUGCGACu----GUCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 40596 | 0.68 | 0.339281 |
Target: 5'- cGGCGCGcGccaUCGACGCUucGAUgAGCGCc -3' miRNA: 3'- uCCGCGCaC---AGCUGCGA--CUG-UCGCGu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 33025 | 0.68 | 0.347498 |
Target: 5'- -cGCGCGcGUUGuCGCccaucGACAGCGCGg -3' miRNA: 3'- ucCGCGCaCAGCuGCGa----CUGUCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 27008 | 0.68 | 0.347498 |
Target: 5'- cGGCGCGcgacUGUgCGACGCccGACGGCa-- -3' miRNA: 3'- uCCGCGC----ACA-GCUGCGa-CUGUCGcgu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 29782 | 0.67 | 0.364357 |
Target: 5'- cGGGCGCGagcgcgaacugGUCGGuCGgaGuCGGCGCGa -3' miRNA: 3'- -UCCGCGCa----------CAGCU-GCgaCuGUCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 4961 | 0.67 | 0.372996 |
Target: 5'- cGGUGCGgccGUCGGCGgaGGCAacaGCAg -3' miRNA: 3'- uCCGCGCa--CAGCUGCgaCUGUcg-CGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 27146 | 0.67 | 0.399736 |
Target: 5'- cGGCGCGguUGUCG-UGUUGGacaaGGCGCc -3' miRNA: 3'- uCCGCGC--ACAGCuGCGACUg---UCGCGu -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 3804 | 0.67 | 0.399736 |
Target: 5'- cAGGCGCucgGUCGACuGaaGGCcGGCGCGa -3' miRNA: 3'- -UCCGCGca-CAGCUG-CgaCUG-UCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 35645 | 0.67 | 0.408918 |
Target: 5'- cGGCGUG-GcCGACGC-GAUcGCGCGc -3' miRNA: 3'- uCCGCGCaCaGCUGCGaCUGuCGCGU- -5' |
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33064 | 5' | -59 | NC_007497.1 | + | 15917 | 0.66 | 0.418229 |
Target: 5'- aGGGUGgGUGcUCGGCucGCauaUGGCAGCGUu -3' miRNA: 3'- -UCCGCgCAC-AGCUG--CG---ACUGUCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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