miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33065 3' -62.2 NC_007497.1 + 23629 0.67 0.316388
Target:  5'- gCGGcCGCCG-GCCGUGACccacuGCgGCCGg -3'
miRNA:   3'- gGCCuGCGGCuCGGCGCUGc----UG-CGGU- -5'
33065 3' -62.2 NC_007497.1 + 33473 0.67 0.316388
Target:  5'- aUCGGACG-CGGG-CG-GGCGGCGCCc -3'
miRNA:   3'- -GGCCUGCgGCUCgGCgCUGCUGCGGu -5'
33065 3' -62.2 NC_007497.1 + 23584 0.67 0.316388
Target:  5'- cCUGGucGCGCUGcuGGgCGCGGCGgcggGCGCCGg -3'
miRNA:   3'- -GGCC--UGCGGC--UCgGCGCUGC----UGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 14948 0.67 0.316388
Target:  5'- uCCGGcaucaGCGUCG-GCgGCGACGAUuucgagauuucgGCCAu -3'
miRNA:   3'- -GGCC-----UGCGGCuCGgCGCUGCUG------------CGGU- -5'
33065 3' -62.2 NC_007497.1 + 23944 0.67 0.316388
Target:  5'- gCCGGccagcgcuucACGCCGGaugaguGCCGCG-CG-CGCCu -3'
miRNA:   3'- -GGCC----------UGCGGCU------CGGCGCuGCuGCGGu -5'
33065 3' -62.2 NC_007497.1 + 13773 0.67 0.301819
Target:  5'- aUGGGuCGCCGcaggGGCCGCacGgGACGCCGc -3'
miRNA:   3'- gGCCU-GCGGC----UCGGCGc-UgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 8752 0.67 0.301819
Target:  5'- aCCGGcgcaggcaaGCUGuGCCGaCGACGGCGaCCu -3'
miRNA:   3'- -GGCCug-------CGGCuCGGC-GCUGCUGC-GGu -5'
33065 3' -62.2 NC_007497.1 + 4918 0.67 0.299679
Target:  5'- cCCGGAaucacgagauugcaCGCCGGGCCGCugaGAaguucaaGGCGCa- -3'
miRNA:   3'- -GGCCU--------------GCGGCUCGGCG---CUg------CUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 2540 0.68 0.287772
Target:  5'- cCCGGgcgugcGCGCCGgcGGCCGCGGCGcauccuUGCg- -3'
miRNA:   3'- -GGCC------UGCGGC--UCGGCGCUGCu-----GCGgu -5'
33065 3' -62.2 NC_007497.1 + 27037 0.68 0.280943
Target:  5'- -aGGAuCGCCGuGaaGCGAucaccCGGCGCCAc -3'
miRNA:   3'- ggCCU-GCGGCuCggCGCU-----GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 16330 0.68 0.27892
Target:  5'- aCGGagcGCGCCG-GCCGuCGGCGuaguggaagugaggGCGCCc -3'
miRNA:   3'- gGCC---UGCGGCuCGGC-GCUGC--------------UGCGGu -5'
33065 3' -62.2 NC_007497.1 + 4362 0.68 0.267674
Target:  5'- aCCGGGCacaaaaGCC-AGCCGCccgugcugaucGGCGACGCaCAc -3'
miRNA:   3'- -GGCCUG------CGGcUCGGCG-----------CUGCUGCG-GU- -5'
33065 3' -62.2 NC_007497.1 + 2618 0.68 0.267674
Target:  5'- -aGGauGCGCCGcGGCCGcCGGCGcgcACGCCc -3'
miRNA:   3'- ggCC--UGCGGC-UCGGC-GCUGC---UGCGGu -5'
33065 3' -62.2 NC_007497.1 + 17555 0.68 0.254915
Target:  5'- uCCGGGCcaGCCgGAGCCGC----GCGCCGa -3'
miRNA:   3'- -GGCCUG--CGG-CUCGGCGcugcUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 32472 0.68 0.251186
Target:  5'- aUGGAacccguacgcguugcCGCCG-GCgGCGgccGCGACGCCAu -3'
miRNA:   3'- gGCCU---------------GCGGCuCGgCGC---UGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 14384 0.68 0.248725
Target:  5'- gCGcGAUGCaGAGCCGCGggccgcucgcugGCGACGCa- -3'
miRNA:   3'- gGC-CUGCGgCUCGGCGC------------UGCUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 29367 0.68 0.248724
Target:  5'- cCCGGuucgaGCGCCacGUCGCGGcCGACGUCGa -3'
miRNA:   3'- -GGCC-----UGCGGcuCGGCGCU-GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 44650 0.69 0.242659
Target:  5'- cCCGGcCGCCGAuGCUGUcGCGGgGCUg -3'
miRNA:   3'- -GGCCuGCGGCU-CGGCGcUGCUgCGGu -5'
33065 3' -62.2 NC_007497.1 + 4783 0.69 0.242059
Target:  5'- uUCGGAauuCGCCcuuggcguaugguGGGCCGCGAUGAaGCCc -3'
miRNA:   3'- -GGCCU---GCGG-------------CUCGGCGCUGCUgCGGu -5'
33065 3' -62.2 NC_007497.1 + 34625 0.69 0.236717
Target:  5'- gCGGccaaGCCGGcggucGCCGCGGUGGCGCCu -3'
miRNA:   3'- gGCCug--CGGCU-----CGGCGCUGCUGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.