Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33065 | 5' | -56.2 | NC_007497.1 | + | 32483 | 0.68 | 0.467895 |
Target: 5'- --aCGCGUugCCGCcGGCGgcggCCGCGa -3' miRNA: 3'- aaaGCGCAuaGGCGuCCGCa---GGUGCa -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 35983 | 0.67 | 0.488551 |
Target: 5'- --cCGCGUAUCCGCGaaGCGacCCGCGc -3' miRNA: 3'- aaaGCGCAUAGGCGUc-CGCa-GGUGCa -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 16850 | 0.66 | 0.563819 |
Target: 5'- --cCGC-UAUCUGCgugcaccccaaAGGCGUCUACGg -3' miRNA: 3'- aaaGCGcAUAGGCG-----------UCCGCAGGUGCa -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 29384 | 0.66 | 0.563819 |
Target: 5'- -gUCGCGg--CCGaCGucgagaaaaccGGCGUCCugGUa -3' miRNA: 3'- aaAGCGCauaGGC-GU-----------CCGCAGGugCA- -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 26344 | 1.04 | 0.001194 |
Target: 5'- aUUUCGCGUAUCCGCAGGCGUCCACGUc -3' miRNA: 3'- -AAAGCGCAUAGGCGUCCGCAGGUGCA- -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 15325 | 0.73 | 0.223691 |
Target: 5'- -cUCGCGgcgcUCgGCcGGCGUCCGCGg -3' miRNA: 3'- aaAGCGCau--AGgCGuCCGCAGGUGCa -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 14178 | 0.69 | 0.390173 |
Target: 5'- cUUCGagcaGg--CCGCcGGCGUCCACGc -3' miRNA: 3'- aAAGCg---CauaGGCGuCCGCAGGUGCa -5' |
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33065 | 5' | -56.2 | NC_007497.1 | + | 32554 | 0.67 | 0.531071 |
Target: 5'- -gUCGCGgccgCCGCcGGCGgcaaCGCGUa -3' miRNA: 3'- aaAGCGCaua-GGCGuCCGCag--GUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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