Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33066 | 5' | -58.6 | NC_007497.1 | + | 22782 | 0.77 | 0.092633 |
Target: 5'- aUGCGgaaauggUCGGcUGCACGUCGUuagcuggaacaccGGGCGCa -3' miRNA: 3'- -ACGCa------AGCCcACGUGCAGCG-------------UCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 21106 | 0.66 | 0.49796 |
Target: 5'- -----aCGGuGUGCGgGUacUGCGGGCGCg -3' miRNA: 3'- acgcaaGCC-CACGUgCA--GCGUCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 35817 | 0.66 | 0.467658 |
Target: 5'- cGCGUcgagCGGcUGcCGCGUUGCuuGCGCg -3' miRNA: 3'- aCGCAa---GCCcAC-GUGCAGCGucCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 3772 | 0.68 | 0.374246 |
Target: 5'- uUGCGUcCGGcugGCG-GUaCGCAGGCGUg -3' miRNA: 3'- -ACGCAaGCCca-CGUgCA-GCGUCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 4261 | 0.69 | 0.33252 |
Target: 5'- cGCGaugagCGGcGUGUGCGUCGCcgaucagcacGGGCGg -3' miRNA: 3'- aCGCaa---GCC-CACGUGCAGCG----------UCCGCg -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 16051 | 0.69 | 0.316813 |
Target: 5'- cGCugacaaCGGGUugauGCGCGaauggCGCGGGCGCg -3' miRNA: 3'- aCGcaa---GCCCA----CGUGCa----GCGUCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 23483 | 0.73 | 0.175296 |
Target: 5'- cGCGcugaUCaGGUGCACGaCGCcGGCGCc -3' miRNA: 3'- aCGCa---AGcCCACGUGCaGCGuCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 8693 | 0.67 | 0.425956 |
Target: 5'- aGCGggCGGG-GCGCGUCGgccgcccggucguguGGCuGCg -3' miRNA: 3'- aCGCaaGCCCaCGUGCAGCgu-------------CCG-CG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 38232 | 0.68 | 0.391901 |
Target: 5'- gGCGcUCaGGcGCGCcacgGUCGCcGGCGCg -3' miRNA: 3'- aCGCaAGcCCaCGUG----CAGCGuCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 33467 | 0.68 | 0.383005 |
Target: 5'- cGCGggCGGGcgGCGCccGUUccgagccggaaaGCAGGCGUc -3' miRNA: 3'- aCGCaaGCCCa-CGUG--CAG------------CGUCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 32878 | 0.68 | 0.374246 |
Target: 5'- cGCGaUUGGcGUGUugG-CGCgagccGGGCGCu -3' miRNA: 3'- aCGCaAGCC-CACGugCaGCG-----UCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 32640 | 0.68 | 0.365622 |
Target: 5'- aUGCGaUCGGacuugGCGCGUCugccGCAGGUGg -3' miRNA: 3'- -ACGCaAGCCca---CGUGCAG----CGUCCGCg -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 16855 | 0.68 | 0.357137 |
Target: 5'- gGCGcugaugCGGGcUGCuCGUcCGCcGGCGCg -3' miRNA: 3'- aCGCaa----GCCC-ACGuGCA-GCGuCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 31399 | 0.68 | 0.352113 |
Target: 5'- gGCGUgaaauacugGCACGUUGCAGaGCGCg -3' miRNA: 3'- aCGCAagccca---CGUGCAGCGUC-CGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 28343 | 0.68 | 0.348791 |
Target: 5'- aUGCGccUUGGGUGCG----GCAGGUGCa -3' miRNA: 3'- -ACGCa-AGCCCACGUgcagCGUCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 37085 | 0.69 | 0.329334 |
Target: 5'- aGCGUUCGGGUcagcgGCGCGccgaagcuuguucCGCcuccGGCGCc -3' miRNA: 3'- aCGCAAGCCCA-----CGUGCa------------GCGu---CCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 22947 | 0.69 | 0.316813 |
Target: 5'- ---aUUCGGGUauGCcgcucguuACGUCGCAGcGCGCg -3' miRNA: 3'- acgcAAGCCCA--CG--------UGCAGCGUC-CGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 15309 | 0.7 | 0.266277 |
Target: 5'- gGCGUccgCGGGaUGCGCcacaggCGCGGGgGCu -3' miRNA: 3'- aCGCAa--GCCC-ACGUGca----GCGUCCgCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 35623 | 0.72 | 0.216734 |
Target: 5'- cGCGgcaugggcCGGG-GCACGUCGgagcugaAGGCGCu -3' miRNA: 3'- aCGCaa------GCCCaCGUGCAGCg------UCCGCG- -5' |
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33066 | 5' | -58.6 | NC_007497.1 | + | 2895 | 0.66 | 0.487758 |
Target: 5'- aUGCa--CGcGGUGCugG-CGCAuGGUGCg -3' miRNA: 3'- -ACGcaaGC-CCACGugCaGCGU-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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