miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33067 3' -51.7 NC_007497.1 + 29127 0.66 0.880141
Target:  5'- uGUCGGuauuGCUGcCGGgcuUCCgcaaauuucugcucGAGGCGCGCg -3'
miRNA:   3'- gCAGCU----UGAU-GCU---AGGa-------------CUCUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 500 0.66 0.868971
Target:  5'- uGUCGcGACgAUGAcgCCUGGaucguGGCGCGCu -3'
miRNA:   3'- gCAGC-UUGaUGCUa-GGACU-----CUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 21575 0.66 0.868971
Target:  5'- uCGUCGAcg-GCG-UCUUGGcgcucgacuacGACGCGCg -3'
miRNA:   3'- -GCAGCUugaUGCuAGGACU-----------CUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 39215 0.66 0.86068
Target:  5'- gCGUCGGGCcgucGCGAUUgugguUUGAGGgGCGUc -3'
miRNA:   3'- -GCAGCUUGa---UGCUAG-----GACUCUgCGCG- -5'
33067 3' -51.7 NC_007497.1 + 35818 0.66 0.85214
Target:  5'- gCGUCGAGCggcugccGCGuugCUUGcgcGAUGCGCa -3'
miRNA:   3'- -GCAGCUUGa------UGCua-GGACu--CUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 34581 0.66 0.84953
Target:  5'- gGUCGGcggGCUGCccggcAUCCUGAcgaccgucggcacgGugGCGCu -3'
miRNA:   3'- gCAGCU---UGAUGc----UAGGACU--------------CugCGCG- -5'
33067 3' -51.7 NC_007497.1 + 27678 0.66 0.848655
Target:  5'- gCGUCGAGCcGCGAUUCgccugcaacugcgUGAuccagucggcggccGACGCGUu -3'
miRNA:   3'- -GCAGCUUGaUGCUAGG-------------ACU--------------CUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 15255 0.67 0.834342
Target:  5'- cCG-CGGACgccggcCGAgcgCCgcGAGGCGCGCa -3'
miRNA:   3'- -GCaGCUUGau----GCUa--GGa-CUCUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 31328 0.67 0.834342
Target:  5'- gGUCGGuggGCGuGUCCUGcuGGGCgGCGCu -3'
miRNA:   3'- gCAGCUugaUGC-UAGGAC--UCUG-CGCG- -5'
33067 3' -51.7 NC_007497.1 + 31976 0.67 0.834342
Target:  5'- aCGUacAACcuuCGAUUCgUGGGGCGCGCg -3'
miRNA:   3'- -GCAgcUUGau-GCUAGG-ACUCUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 33290 0.67 0.825104
Target:  5'- uGUCGGACgGCGAcaagagCCUGAucCGCGa -3'
miRNA:   3'- gCAGCUUGaUGCUa-----GGACUcuGCGCg -5'
33067 3' -51.7 NC_007497.1 + 26251 0.67 0.806972
Target:  5'- aCGUCGGGCcaugguauccggccgACGGUCCc--GGCGUGCa -3'
miRNA:   3'- -GCAGCUUGa--------------UGCUAGGacuCUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 27259 0.68 0.796153
Target:  5'- aCG-CGAugUGCcuGcgCCUGcGACGUGCa -3'
miRNA:   3'- -GCaGCUugAUG--CuaGGACuCUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 35929 0.68 0.775935
Target:  5'- gGUCGAuuUUGCGGUCgCgcagGAcGACGUGCu -3'
miRNA:   3'- gCAGCUu-GAUGCUAG-Ga---CU-CUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 5605 0.68 0.775935
Target:  5'- cCGgCGAAg-GCGGUCCUGAuGGCGCu- -3'
miRNA:   3'- -GCaGCUUgaUGCUAGGACU-CUGCGcg -5'
33067 3' -51.7 NC_007497.1 + 8175 0.68 0.755093
Target:  5'- cCGUCG-GCUGgGAaaUCUgGAGACGaCGCg -3'
miRNA:   3'- -GCAGCuUGAUgCU--AGGaCUCUGC-GCG- -5'
33067 3' -51.7 NC_007497.1 + 20445 0.69 0.733724
Target:  5'- uCGUCGAaggACU-UGAccgCCUGAGcCGUGCa -3'
miRNA:   3'- -GCAGCU---UGAuGCUa--GGACUCuGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 10198 0.69 0.730479
Target:  5'- gGUgCGAgcaagagcaauuauGCUGCGAUCC-GAGcggcagccuGCGCGCg -3'
miRNA:   3'- gCA-GCU--------------UGAUGCUAGGaCUC---------UGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 21106 0.69 0.700899
Target:  5'- --aCGGugUGCGGguaCUGcGGGCGCGCg -3'
miRNA:   3'- gcaGCUugAUGCUag-GAC-UCUGCGCG- -5'
33067 3' -51.7 NC_007497.1 + 2512 0.7 0.667442
Target:  5'- gGUgCGAcaUGCGGUCCUGccacuucugcccGGGCGUGCg -3'
miRNA:   3'- gCA-GCUugAUGCUAGGAC------------UCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.