Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33068 | 3' | -56.7 | NC_007497.1 | + | 28061 | 1.09 | 0.000557 |
Target: 5'- aCAGCUCGCUGAUCGCCGACACGGUGAa -3' miRNA: 3'- -GUCGAGCGACUAGCGGCUGUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 14782 | 0.72 | 0.278764 |
Target: 5'- uGGCUUGCUcGUCGCCGACugcuCGGcGGc -3' miRNA: 3'- gUCGAGCGAcUAGCGGCUGu---GCCaCU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 38225 | 0.71 | 0.285922 |
Target: 5'- aGGCgCGCcacGGUCGCCGGCGCGaacGUGAu -3' miRNA: 3'- gUCGaGCGa--CUAGCGGCUGUGC---CACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 41088 | 0.71 | 0.293225 |
Target: 5'- aAGCgccgCGCUGAUcCGCUu-CGCGGUGAc -3' miRNA: 3'- gUCGa---GCGACUA-GCGGcuGUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 23534 | 0.71 | 0.300673 |
Target: 5'- uCAGCgcgCGCgaGAUCGCCGACAUGa--- -3' miRNA: 3'- -GUCGa--GCGa-CUAGCGGCUGUGCcacu -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 8222 | 0.71 | 0.316004 |
Target: 5'- aGGcCUCGCUGGgccuugaugUCGCUGagaaGCGCGGUGGc -3' miRNA: 3'- gUC-GAGCGACU---------AGCGGC----UGUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 35796 | 0.71 | 0.323093 |
Target: 5'- uCGGCcCGCUGGUCGagaCGAUcagcaagGCGGUGGc -3' miRNA: 3'- -GUCGaGCGACUAGCg--GCUG-------UGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 33400 | 0.71 | 0.323888 |
Target: 5'- -cGCgcaGCUGcgCGUCGAgGCGGUGGc -3' miRNA: 3'- guCGag-CGACuaGCGGCUgUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 34567 | 0.7 | 0.374233 |
Target: 5'- cCGGCaUC-CUGAcgacCGUCGGCACGGUGGc -3' miRNA: 3'- -GUCG-AGcGACUa---GCGGCUGUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 30420 | 0.69 | 0.382228 |
Target: 5'- cCGGCgcaCGCUGG-CGaaguaucUCGACGCGGUGAa -3' miRNA: 3'- -GUCGa--GCGACUaGC-------GGCUGUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 27237 | 0.69 | 0.392153 |
Target: 5'- aCGGCgUGCUGGUCGguCCGGgGCaGGUGAu -3' miRNA: 3'- -GUCGaGCGACUAGC--GGCUgUG-CCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 16155 | 0.69 | 0.40132 |
Target: 5'- aCGGCguugCGCUGAUC-CCGGCACGc--- -3' miRNA: 3'- -GUCGa---GCGACUAGcGGCUGUGCcacu -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 1093 | 0.68 | 0.44913 |
Target: 5'- gCAGCgcgCGCgaUGAUCaCUG-CACGGUGAa -3' miRNA: 3'- -GUCGa--GCG--ACUAGcGGCuGUGCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 18784 | 0.68 | 0.459065 |
Target: 5'- aAGCUgCGCaGAUaCGCCGGCAguggauuugUGGUGGa -3' miRNA: 3'- gUCGA-GCGaCUA-GCGGCUGU---------GCCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 35084 | 0.68 | 0.469116 |
Target: 5'- gCAGUccgCGUUGAUCGCCGgcucgauucgauACACGGa-- -3' miRNA: 3'- -GUCGa--GCGACUAGCGGC------------UGUGCCacu -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 3800 | 0.67 | 0.489548 |
Target: 5'- -cGCUCGgucgaCUGAagGCCGGCGCGaUGAa -3' miRNA: 3'- guCGAGC-----GACUagCGGCUGUGCcACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 35998 | 0.67 | 0.499919 |
Target: 5'- uCAGCUCGUcGAUuaUGCCGACGa-GUGGa -3' miRNA: 3'- -GUCGAGCGaCUA--GCGGCUGUgcCACU- -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 16868 | 0.67 | 0.517767 |
Target: 5'- gGGCguaucgaucggCGCUGAUgcgggcugcucgucCGCCGGCGCGGg-- -3' miRNA: 3'- gUCGa----------GCGACUA--------------GCGGCUGUGCCacu -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 44115 | 0.67 | 0.520943 |
Target: 5'- -uGCUCGCUGcauUCGCCGAa--GGUc- -3' miRNA: 3'- guCGAGCGACu--AGCGGCUgugCCAcu -5' |
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33068 | 3' | -56.7 | NC_007497.1 | + | 27952 | 0.67 | 0.542304 |
Target: 5'- gCAGCUUGC-GGUCGauGAUuuCGGUGAu -3' miRNA: 3'- -GUCGAGCGaCUAGCggCUGu-GCCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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