miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33068 5' -48.6 NC_007497.1 + 4634 0.66 0.945001
Target:  5'- -cUgACCGGAGUCAggauugacgcugugUCGACCG--AGCg -3'
miRNA:   3'- cuAgUGGCUUUAGU--------------AGCUGGCguUCG- -5'
33068 5' -48.6 NC_007497.1 + 26788 0.67 0.941382
Target:  5'- aAUCugCGcgccGUCGUCGAUCGCc-GCg -3'
miRNA:   3'- cUAGugGCuu--UAGUAGCUGGCGuuCG- -5'
33068 5' -48.6 NC_007497.1 + 26045 0.67 0.941382
Target:  5'- uGGUCGCUGcAGUCggCGAUUGCcgaGGGCg -3'
miRNA:   3'- -CUAGUGGCuUUAGuaGCUGGCG---UUCG- -5'
33068 5' -48.6 NC_007497.1 + 39361 0.67 0.941382
Target:  5'- uGAUCAUCGAccgCAUCGGgguUCGCGuGCu -3'
miRNA:   3'- -CUAGUGGCUuuaGUAGCU---GGCGUuCG- -5'
33068 5' -48.6 NC_007497.1 + 23266 0.67 0.941382
Target:  5'- cGAUCugcuuGCCGAcGUgcUCGGCCGCGuugacgAGCg -3'
miRNA:   3'- -CUAG-----UGGCUuUAguAGCUGGCGU------UCG- -5'
33068 5' -48.6 NC_007497.1 + 33980 0.67 0.941382
Target:  5'- -uUCGCCGGcggCAU-GGCCGCcgAAGCg -3'
miRNA:   3'- cuAGUGGCUuuaGUAgCUGGCG--UUCG- -5'
33068 5' -48.6 NC_007497.1 + 14869 0.67 0.935948
Target:  5'- aAUCcUCGAAAUCGUCG-CCGCcgacGCu -3'
miRNA:   3'- cUAGuGGCUUUAGUAGCuGGCGuu--CG- -5'
33068 5' -48.6 NC_007497.1 + 26043 0.67 0.935388
Target:  5'- cGUCGCCGGccaucggaggcguGAUCgaGUCGAUCGgcuCGAGCa -3'
miRNA:   3'- cUAGUGGCU-------------UUAG--UAGCUGGC---GUUCG- -5'
33068 5' -48.6 NC_007497.1 + 232 0.67 0.930205
Target:  5'- uGAUCGCCGA-----UCGugC-CAAGCg -3'
miRNA:   3'- -CUAGUGGCUuuaguAGCugGcGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 31279 0.67 0.930205
Target:  5'- --gCACUGcAGGUCAagggGGCCGCAAGUa -3'
miRNA:   3'- cuaGUGGC-UUUAGUag--CUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 8831 0.67 0.930205
Target:  5'- aGGUCGCCG---UCGUCGGCacaGCuuGCc -3'
miRNA:   3'- -CUAGUGGCuuuAGUAGCUGg--CGuuCG- -5'
33068 5' -48.6 NC_007497.1 + 34099 0.67 0.924151
Target:  5'- cGUCGCCGcGAcgaacaCGUCGACgagucgCGCAAGCu -3'
miRNA:   3'- cUAGUGGCuUUa-----GUAGCUG------GCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 828 0.67 0.924151
Target:  5'- ---aAUCGAGcgCAagcuaUCGACCGCAGGa -3'
miRNA:   3'- cuagUGGCUUuaGU-----AGCUGGCGUUCg -5'
33068 5' -48.6 NC_007497.1 + 32312 0.67 0.923529
Target:  5'- ---aACCGAcGUCG-CGACCGCcguugauagccucGAGCa -3'
miRNA:   3'- cuagUGGCUuUAGUaGCUGGCG-------------UUCG- -5'
33068 5' -48.6 NC_007497.1 + 2159 0.67 0.917786
Target:  5'- --cCACCGu-GUCAUCGAUCGgAuucAGCc -3'
miRNA:   3'- cuaGUGGCuuUAGUAGCUGGCgU---UCG- -5'
33068 5' -48.6 NC_007497.1 + 28683 0.67 0.917786
Target:  5'- uGUCGCCGuAAAUCAgCGGCa-CGGGCu -3'
miRNA:   3'- cUAGUGGC-UUUAGUaGCUGgcGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 34154 0.67 0.917786
Target:  5'- --aCGCCGAGAUUuUCGGCCuuGAcGCg -3'
miRNA:   3'- cuaGUGGCUUUAGuAGCUGGcgUU-CG- -5'
33068 5' -48.6 NC_007497.1 + 43612 0.68 0.91111
Target:  5'- cGUgACgGcaAAAUCGUCGACCGgAAGUc -3'
miRNA:   3'- cUAgUGgC--UUUAGUAGCUGGCgUUCG- -5'
33068 5' -48.6 NC_007497.1 + 26959 0.68 0.91111
Target:  5'- --gCAUCGAAGcgGUCGACCaacGUAAGCg -3'
miRNA:   3'- cuaGUGGCUUUagUAGCUGG---CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 32175 0.68 0.91111
Target:  5'- cAUCugCGAcg-CGUCGGCCGUuccGCc -3'
miRNA:   3'- cUAGugGCUuuaGUAGCUGGCGuu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.