miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33070 3' -51.3 NC_007497.1 + 17193 0.67 0.826677
Target:  5'- gCGAGaGGAAucGCGGCcgccccGCAGCCGc -3'
miRNA:   3'- aGCUCgUCUUuuCGCUGcu----UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 29909 0.67 0.826677
Target:  5'- aUCGuGCGGAc-AGCGGCGggUGaguguauuuGCCGg -3'
miRNA:   3'- -AGCuCGUCUuuUCGCUGCuuGU---------CGGC- -5'
33070 3' -51.3 NC_007497.1 + 30124 0.67 0.826677
Target:  5'- aUCGcugcagccAGCGGAucAGCGgguGCGAAC-GCCGg -3'
miRNA:   3'- -AGC--------UCGUCUuuUCGC---UGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 35488 0.67 0.825729
Target:  5'- gUCGGGCA----AGCGAUGAcucgccuGCAGaCCGa -3'
miRNA:   3'- -AGCUCGUcuuuUCGCUGCU-------UGUC-GGC- -5'
33070 3' -51.3 NC_007497.1 + 27100 0.67 0.817094
Target:  5'- cCG-GCAGcgGAGCGGau-ACGGCCGc -3'
miRNA:   3'- aGCuCGUCuuUUCGCUgcuUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 15922 0.67 0.816124
Target:  5'- -aGAGCGcacggauGAAGAaCGACGAAUGGCUGa -3'
miRNA:   3'- agCUCGU-------CUUUUcGCUGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 24523 0.67 0.8073
Target:  5'- aCGcGCGGGAuugccacGGCGGCGAA-GGCCGu -3'
miRNA:   3'- aGCuCGUCUUu------UCGCUGCUUgUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 37772 0.67 0.797306
Target:  5'- gCGAGaCAuGGcgcuuggcGGAGCGACGGGCGGCa- -3'
miRNA:   3'- aGCUC-GU-CU--------UUUCGCUGCUUGUCGgc -5'
33070 3' -51.3 NC_007497.1 + 36661 0.67 0.797306
Target:  5'- cUGGGCGGucucGAcauacagcacGCGaACGAACAGCCGc -3'
miRNA:   3'- aGCUCGUCuu--UU----------CGC-UGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 43674 0.68 0.776767
Target:  5'- ---cGCA---AAGCGACGAGCcGCCGg -3'
miRNA:   3'- agcuCGUcuuUUCGCUGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 35439 0.68 0.776767
Target:  5'- gUCGAGC-GAacGAAGCGACcGGC-GCCa -3'
miRNA:   3'- -AGCUCGuCU--UUUCGCUGcUUGuCGGc -5'
33070 3' -51.3 NC_007497.1 + 20553 0.68 0.766247
Target:  5'- gCGAGUAcaaccguGAGCGACuGAaagcACAGCCGa -3'
miRNA:   3'- aGCUCGUcuu----UUCGCUG-CU----UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 4340 0.68 0.766247
Target:  5'- cCGuGCuGAucGGCGACGcACAcGCCGc -3'
miRNA:   3'- aGCuCGuCUuuUCGCUGCuUGU-CGGC- -5'
33070 3' -51.3 NC_007497.1 + 22258 0.68 0.765187
Target:  5'- cCGAGUcgauuccGGAGGAGgGACGGugGGCg- -3'
miRNA:   3'- aGCUCG-------UCUUUUCgCUGCUugUCGgc -5'
33070 3' -51.3 NC_007497.1 + 978 0.68 0.759863
Target:  5'- cCGAGCAGuacgcGGcCGACGAuccgugagccagcugAUAGCCGc -3'
miRNA:   3'- aGCUCGUCuuu--UC-GCUGCU---------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 8430 0.68 0.755578
Target:  5'- gUGGGCAGAGcAAGCuuucacGCGAcacuggaguuccGCAGCCGa -3'
miRNA:   3'- aGCUCGUCUU-UUCGc-----UGCU------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 34568 0.68 0.755578
Target:  5'- aUGAGC-GAGccuGCG-CGGGCGGCCGc -3'
miRNA:   3'- aGCUCGuCUUuu-CGCuGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 41353 0.68 0.755578
Target:  5'- -aGA--AGggGAGUGGCGAugAGCCu -3'
miRNA:   3'- agCUcgUCuuUUCGCUGCUugUCGGc -5'
33070 3' -51.3 NC_007497.1 + 43495 0.68 0.755578
Target:  5'- cUCGGGCGGucggucAGUGcCGAAUGGCUGg -3'
miRNA:   3'- -AGCUCGUCuuu---UCGCuGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 30930 0.68 0.755578
Target:  5'- gCGGGCAGuuu-GCGGgGAucgACGGCCu -3'
miRNA:   3'- aGCUCGUCuuuuCGCUgCU---UGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.