miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33071 3' -56.8 NC_007497.1 + 16155 0.66 0.608338
Target:  5'- aCGGCGuugcgcugaucCCGGCACgcACcGagaCGGCGACg -3'
miRNA:   3'- -GCCGC-----------GGCUGUGaaUGaCa--GCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 35199 0.66 0.597358
Target:  5'- aGGCGCgGAgcgauCGCgaugcgGCUG-CGGCGAa -3'
miRNA:   3'- gCCGCGgCU-----GUGaa----UGACaGCCGCUg -5'
33071 3' -56.8 NC_007497.1 + 4359 0.66 0.597358
Target:  5'- gGGCacaaaaGCCaGcCGCccgUGCUGaUCGGCGACg -3'
miRNA:   3'- gCCG------CGG-CuGUGa--AUGAC-AGCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 27171 0.66 0.597358
Target:  5'- uCGGCgGCCGuaucCGCUccGCUGcCGGCG-Cg -3'
miRNA:   3'- -GCCG-CGGCu---GUGAa-UGACaGCCGCuG- -5'
33071 3' -56.8 NC_007497.1 + 42010 0.66 0.596261
Target:  5'- uCGcGCGCCGGCAacucgauCUUGuCcccgGUCGGCGuCg -3'
miRNA:   3'- -GC-CGCGGCUGU-------GAAU-Ga---CAGCCGCuG- -5'
33071 3' -56.8 NC_007497.1 + 44651 0.66 0.575495
Target:  5'- cCGGcCGCCGAU----GCUGUCGcGgGGCu -3'
miRNA:   3'- -GCC-GCGGCUGugaaUGACAGC-CgCUG- -5'
33071 3' -56.8 NC_007497.1 + 19233 0.66 0.575495
Target:  5'- aCGGcCGCUG-CGCaUACUG-CGGUGAg -3'
miRNA:   3'- -GCC-GCGGCuGUGaAUGACaGCCGCUg -5'
33071 3' -56.8 NC_007497.1 + 14964 0.66 0.575495
Target:  5'- aGGUGagcaugaucguuCCGGCAUcaGC-GUCGGCGGCg -3'
miRNA:   3'- gCCGC------------GGCUGUGaaUGaCAGCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 41002 0.66 0.575495
Target:  5'- gCGGCGUCGGCAgcCUcggucaucGCgaugGcCGGCGACg -3'
miRNA:   3'- -GCCGCGGCUGU--GAa-------UGa---CaGCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 7011 0.66 0.574406
Target:  5'- uGGCugauccgGCCGGCACUcgaUGUCgcccugGGCGACc -3'
miRNA:   3'- gCCG-------CGGCUGUGAaugACAG------CCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 39953 0.66 0.564629
Target:  5'- gGGCgGCaCGACGagcgGCUggGUCGGCGAa -3'
miRNA:   3'- gCCG-CG-GCUGUgaa-UGA--CAGCCGCUg -5'
33071 3' -56.8 NC_007497.1 + 39410 0.66 0.564629
Target:  5'- gCGGCGaacuCGACGCcgAUUcucuUCGGCGACu -3'
miRNA:   3'- -GCCGCg---GCUGUGaaUGAc---AGCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 23122 0.66 0.564629
Target:  5'- -cGCGCUcGCAC-UGCUGgcCGGCGAUg -3'
miRNA:   3'- gcCGCGGcUGUGaAUGACa-GCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 26053 0.66 0.564629
Target:  5'- cCGGCGUgUGGuCGC-UGCaGUCGGCGAUu -3'
miRNA:   3'- -GCCGCG-GCU-GUGaAUGaCAGCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 3151 0.66 0.56138
Target:  5'- aCGGCGCCGGCcagcgcGCUuuugaugaugcugaUGCUGUCGa-GGCc -3'
miRNA:   3'- -GCCGCGGCUG------UGA--------------AUGACAGCcgCUG- -5'
33071 3' -56.8 NC_007497.1 + 41235 0.66 0.553818
Target:  5'- gGGCGgCGaACGCcgACgaugCGGCGGCg -3'
miRNA:   3'- gCCGCgGC-UGUGaaUGaca-GCCGCUG- -5'
33071 3' -56.8 NC_007497.1 + 35769 0.67 0.532389
Target:  5'- aGGCGgUGGCGCUguccgGCguaUCGGcCGACa -3'
miRNA:   3'- gCCGCgGCUGUGAa----UGac-AGCC-GCUG- -5'
33071 3' -56.8 NC_007497.1 + 19353 0.67 0.521787
Target:  5'- gGGCGCCGACACggcCUGaguUCGaugucauCGACa -3'
miRNA:   3'- gCCGCGGCUGUGaauGAC---AGCc------GCUG- -5'
33071 3' -56.8 NC_007497.1 + 11297 0.67 0.521787
Target:  5'- uGGCcCCGACcgcgaccgguuuACUUgcACUGUUGGCGGu -3'
miRNA:   3'- gCCGcGGCUG------------UGAA--UGACAGCCGCUg -5'
33071 3' -56.8 NC_007497.1 + 30441 0.67 0.511267
Target:  5'- uGuCGCCGACAgUaAgUGUCGGCGcCg -3'
miRNA:   3'- gCcGCGGCUGUgAaUgACAGCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.